Gene : Seita.3G340500 S. italica v2.2
Defline:  (1 of 1) PTHR14222:SF1 - CONDENSIN-2 COMPLEX SUBUNIT D3 Genomic Order:  3405
Name:  ? Seita.3G340500 Secondary Identifier:  ? PAC:32714317
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G340500 0.5kb upstream 0.5kb upstream 6452 true scaffold_3: 43696073-43702524 Setaria italica
Seita.3G340500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 43696073-43696572 Setaria italica
Seita.3G340500 0.5kb downstream 0.5kb downstream 6452 true scaffold_3: 43696573-43703024 Setaria italica
Seita.3G340500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 43702525-43703024 Setaria italica
Seita.3G340500 1.0kb upstream 1.0kb upstream 6952 true scaffold_3: 43695573-43702524 Setaria italica
Seita.3G340500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 43695573-43696572 Setaria italica
Seita.3G340500 1.0kb downstream 1.0kb downstream 6952 true scaffold_3: 43696573-43703524 Setaria italica
Seita.3G340500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 43702525-43703524 Setaria italica
Seita.3G340500 2.0kb upstream 2.0kb upstream 7952 true scaffold_3: 43694573-43702524 Setaria italica
Seita.3G340500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 43694573-43696572 Setaria italica
Seita.3G340500 2.0kb downstream 2.0kb downstream 7952 true scaffold_3: 43696573-43704524 Setaria italica
Seita.3G340500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 43702525-43704524 Setaria italica
Seita.3G340500 5.0kb upstream 5.0kb upstream 10952 true scaffold_3: 43691573-43702524 Setaria italica
Seita.3G340500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 43691573-43696572 Setaria italica
Seita.3G340500 5.0kb downstream 5.0kb downstream 10952 true scaffold_3: 43696573-43707524 Setaria italica
Seita.3G340500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 43702525-43707524 Setaria italica
Seita.3G340500 10.0kb upstream 10.0kb upstream 15952 true scaffold_3: 43686573-43702524 Setaria italica
Seita.3G340500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 43686573-43696572 Setaria italica
Seita.3G340500 10.0kb downstream 10.0kb downstream 15952 true scaffold_3: 43696573-43712524 Setaria italica
Seita.3G340500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 43702525-43712524 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027913 5273 Angiosperm View MSA
122182129 5267 Panicoideae View MSA
124575652 5269 Grass View MSA
121345565 5274 Embryophyte View MSA
123425624 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.35        
cufflinks 3.632       High
cufflinks 0.676        
cufflinks 0.475       Low
cufflinks 0.239       Low
cufflinks 3.529       High
cufflinks 2.195        
cufflinks 2.539        
cufflinks 1.367        
cufflinks 1.667        
cufflinks 2.598        
cufflinks 2.256        
cufflinks 0.976        
cufflinks 0.753        
cufflinks 2.825        
cufflinks 0.98        
cufflinks 2.587        
cufflinks 0.635        
cufflinks 0.395       Low
cufflinks 2.854        

0 Strain