Gene : Seita.3G343200 S. italica v2.2
Defline:  (1 of 1) PTHR21098 - RIBOFLAVIN SYNTHASE ALPHA CHAIN Genomic Order:  3432
Name:  ? Seita.3G343200 Secondary Identifier:  ? PAC:32714596
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica RIBOSYN2-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G343200 0.5kb upstream 0.5kb upstream 6019 true scaffold_3: 44215985-44222003 Setaria italica
Seita.3G343200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 44221504-44222003 Setaria italica
Seita.3G343200 0.5kb downstream 0.5kb downstream 6019 true scaffold_3: 44215485-44221503 Setaria italica
Seita.3G343200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 44215485-44215984 Setaria italica
Seita.3G343200 1.0kb upstream 1.0kb upstream 6519 true scaffold_3: 44215985-44222503 Setaria italica
Seita.3G343200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 44221504-44222503 Setaria italica
Seita.3G343200 1.0kb downstream 1.0kb downstream 6519 true scaffold_3: 44214985-44221503 Setaria italica
Seita.3G343200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 44214985-44215984 Setaria italica
Seita.3G343200 2.0kb upstream 2.0kb upstream 7519 true scaffold_3: 44215985-44223503 Setaria italica
Seita.3G343200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 44221504-44223503 Setaria italica
Seita.3G343200 2.0kb downstream 2.0kb downstream 7519 true scaffold_3: 44213985-44221503 Setaria italica
Seita.3G343200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 44213985-44215984 Setaria italica
Seita.3G343200 5.0kb upstream 5.0kb upstream 10519 true scaffold_3: 44215985-44226503 Setaria italica
Seita.3G343200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 44221504-44226503 Setaria italica
Seita.3G343200 5.0kb downstream 5.0kb downstream 10519 true scaffold_3: 44210985-44221503 Setaria italica
Seita.3G343200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 44210985-44215984 Setaria italica
Seita.3G343200 10.0kb upstream 10.0kb upstream 15519 true scaffold_3: 44215985-44231503 Setaria italica
Seita.3G343200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 44221504-44231503 Setaria italica
Seita.3G343200 10.0kb downstream 10.0kb downstream 15519 true scaffold_3: 44205985-44221503 Setaria italica
Seita.3G343200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 44205985-44215984 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194971 5267 Panicoideae View MSA
124578640 5269 Grass View MSA
122043158 5273 Angiosperm View MSA
121344512 5274 Embryophyte View MSA
123423798 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.113        
cufflinks 0.865        
cufflinks 0.839        
cufflinks 0.686       Low
cufflinks 0.824        
cufflinks 0.945        
cufflinks 0.892        
cufflinks 2.428       High
cufflinks 1.26        
cufflinks 2.305       High
cufflinks 1.024        
cufflinks 0.917        
cufflinks 0.996        
cufflinks 1.268        
cufflinks 0.936        
cufflinks 0.675       Low
cufflinks 1.459        
cufflinks 0.699       Low
cufflinks 0.873        
cufflinks 1.144        

0 Strain