Gene : Seita.3G258100 S. italica v2.2
Defline:  (1 of 1) PTHR23105:SF5 - 39S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL Genomic Order:  2581
Name:  ? Seita.3G258100 Secondary Identifier:  ? PAC:32711812
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G258100 0.5kb upstream 0.5kb upstream 4059 true scaffold_3: 22419164-22423222 Setaria italica
Seita.3G258100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 22422723-22423222 Setaria italica
Seita.3G258100 0.5kb downstream 0.5kb downstream 4059 true scaffold_3: 22418664-22422722 Setaria italica
Seita.3G258100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 22418664-22419163 Setaria italica
Seita.3G258100 1.0kb upstream 1.0kb upstream 4559 true scaffold_3: 22419164-22423722 Setaria italica
Seita.3G258100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 22422723-22423722 Setaria italica
Seita.3G258100 1.0kb downstream 1.0kb downstream 4559 true scaffold_3: 22418164-22422722 Setaria italica
Seita.3G258100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 22418164-22419163 Setaria italica
Seita.3G258100 2.0kb upstream 2.0kb upstream 5559 true scaffold_3: 22419164-22424722 Setaria italica
Seita.3G258100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 22422723-22424722 Setaria italica
Seita.3G258100 2.0kb downstream 2.0kb downstream 5559 true scaffold_3: 22417164-22422722 Setaria italica
Seita.3G258100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 22417164-22419163 Setaria italica
Seita.3G258100 5.0kb upstream 5.0kb upstream 8559 true scaffold_3: 22419164-22427722 Setaria italica
Seita.3G258100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 22422723-22427722 Setaria italica
Seita.3G258100 5.0kb downstream 5.0kb downstream 8559 true scaffold_3: 22414164-22422722 Setaria italica
Seita.3G258100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 22414164-22419163 Setaria italica
Seita.3G258100 10.0kb upstream 10.0kb upstream 13559 true scaffold_3: 22419164-22432722 Setaria italica
Seita.3G258100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 22422723-22432722 Setaria italica
Seita.3G258100 10.0kb downstream 10.0kb downstream 13559 true scaffold_3: 22409164-22422722 Setaria italica
Seita.3G258100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 22409164-22419163 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175630 5267 Panicoideae View MSA
124571903 5269 Grass View MSA
122046833 5273 Angiosperm View MSA
121346612 5274 Embryophyte View MSA
123427528 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.396     High  
cufflinks 24.021     High  
cufflinks 132.091     High High
cufflinks 122.852     High High
cufflinks 131.137     High High
cufflinks 29.835     High  
cufflinks 98.318     High  
cufflinks 135.304     High High
cufflinks 148.373     High High
cufflinks 16.683     High  
cufflinks 18.153     High  
cufflinks 6.253       Low
cufflinks 29.587     High  
cufflinks 68.628     High  
cufflinks 8.224       Low
cufflinks 138.66     High High
cufflinks 8.116       Low
cufflinks 30.564     High  
cufflinks 101.459     High  
cufflinks 10.854       Low

0 Strain