Gene : Seita.3G260400 S. italica v2.2
Defline:  (1 of 1) PTHR13247//PTHR13247:SF3 - TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 Genomic Order:  2604
Name:  ? Seita.3G260400 Secondary Identifier:  ? PAC:32713777
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G260400 0.5kb upstream 0.5kb upstream 4196 true scaffold_3: 22640083-22644278 Setaria italica
Seita.3G260400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 22640083-22640582 Setaria italica
Seita.3G260400 0.5kb downstream 0.5kb downstream 4196 true scaffold_3: 22640583-22644778 Setaria italica
Seita.3G260400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 22644279-22644778 Setaria italica
Seita.3G260400 1.0kb upstream 1.0kb upstream 4696 true scaffold_3: 22639583-22644278 Setaria italica
Seita.3G260400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 22639583-22640582 Setaria italica
Seita.3G260400 1.0kb downstream 1.0kb downstream 4696 true scaffold_3: 22640583-22645278 Setaria italica
Seita.3G260400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 22644279-22645278 Setaria italica
Seita.3G260400 2.0kb upstream 2.0kb upstream 5696 true scaffold_3: 22638583-22644278 Setaria italica
Seita.3G260400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 22638583-22640582 Setaria italica
Seita.3G260400 2.0kb downstream 2.0kb downstream 5696 true scaffold_3: 22640583-22646278 Setaria italica
Seita.3G260400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 22644279-22646278 Setaria italica
Seita.3G260400 5.0kb upstream 5.0kb upstream 8696 true scaffold_3: 22635583-22644278 Setaria italica
Seita.3G260400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 22635583-22640582 Setaria italica
Seita.3G260400 5.0kb downstream 5.0kb downstream 8696 true scaffold_3: 22640583-22649278 Setaria italica
Seita.3G260400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 22644279-22649278 Setaria italica
Seita.3G260400 10.0kb upstream 10.0kb upstream 13696 true scaffold_3: 22630583-22644278 Setaria italica
Seita.3G260400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 22630583-22640582 Setaria italica
Seita.3G260400 10.0kb downstream 10.0kb downstream 13696 true scaffold_3: 22640583-22654278 Setaria italica
Seita.3G260400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 22644279-22654278 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180680 5267 Panicoideae View MSA
124575765 5269 Grass View MSA
122046203 5273 Angiosperm View MSA
123429111 5275 Viridiplantae View MSA
121347777 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.857        
cufflinks 11.166        
cufflinks 6.112       Low
cufflinks 6.471       Low
cufflinks 7.355       Low
cufflinks 11.977        
cufflinks 8.252        
cufflinks 10.212        
cufflinks 10.242        
cufflinks 13.226        
cufflinks 12.147        
cufflinks 19.755     High High
cufflinks 16.58     High High
cufflinks 10.006        
cufflinks 14.404     High  
cufflinks 7.944        
cufflinks 13.821        
cufflinks 18.197     High High
cufflinks 8.111        
cufflinks 13.766        

0 Strain