Gene : Seita.3G261300 S. italica v2.2

Genomic Order:  2613 Name:  ? Seita.3G261300
Secondary Identifier:  ? PAC:32714067

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G261300 0.5kb upstream 0.5kb upstream 6248 true scaffold_3: 22776295-22782542 Setaria italica
Seita.3G261300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 22782043-22782542 Setaria italica
Seita.3G261300 0.5kb downstream 0.5kb downstream 6248 true scaffold_3: 22775795-22782042 Setaria italica
Seita.3G261300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 22775795-22776294 Setaria italica
Seita.3G261300 1.0kb upstream 1.0kb upstream 6748 true scaffold_3: 22776295-22783042 Setaria italica
Seita.3G261300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 22782043-22783042 Setaria italica
Seita.3G261300 1.0kb downstream 1.0kb downstream 6748 true scaffold_3: 22775295-22782042 Setaria italica
Seita.3G261300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 22775295-22776294 Setaria italica
Seita.3G261300 2.0kb upstream 2.0kb upstream 7748 true scaffold_3: 22776295-22784042 Setaria italica
Seita.3G261300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 22782043-22784042 Setaria italica
Seita.3G261300 2.0kb downstream 2.0kb downstream 7748 true scaffold_3: 22774295-22782042 Setaria italica
Seita.3G261300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 22774295-22776294 Setaria italica
Seita.3G261300 5.0kb upstream 5.0kb upstream 10748 true scaffold_3: 22776295-22787042 Setaria italica
Seita.3G261300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 22782043-22787042 Setaria italica
Seita.3G261300 5.0kb downstream 5.0kb downstream 10748 true scaffold_3: 22771295-22782042 Setaria italica
Seita.3G261300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 22771295-22776294 Setaria italica
Seita.3G261300 10.0kb upstream 10.0kb upstream 15748 true scaffold_3: 22776295-22792042 Setaria italica
Seita.3G261300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 22782043-22792042 Setaria italica
Seita.3G261300 10.0kb downstream 10.0kb downstream 15748 true scaffold_3: 22766295-22782042 Setaria italica
Seita.3G261300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 22766295-22776294 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188929 5267 Panicoideae View MSA
124577158 5269 Grass View MSA
122046411 5273 Angiosperm View MSA
121347795 5274 Embryophyte View MSA
123426242 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.742        
cufflinks 3.18        
cufflinks 19.119     High High
cufflinks 18.667     High High
cufflinks 19.654     High High
cufflinks 3.463        
cufflinks 16.058     High  
cufflinks 12.753        
cufflinks 15.182     High  
cufflinks 4.228        
cufflinks 3.307        
cufflinks 1.539       Low
cufflinks 1.194       Low
cufflinks 15.576     High  
cufflinks 1.26       Low
cufflinks 34.877     High High
cufflinks 1.952       Low
cufflinks 7.938        
cufflinks 12.643     High  
cufflinks 1.409       Low

0 Strain