Gene : Seita.3G269500 S. italica v2.2
Defline:  (1 of 7) 4.1.1.39 - Ribulose-bisphosphate carboxylase / RuBP carboxylase Genomic Order:  2695
Name:  ? Seita.3G269500 Secondary Identifier:  ? PAC:32711945
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CALVIN-PWY Setaria italica pathologic  
Sitalica PHOTOALL-PWY Setaria italica pathologic  
Sitalica PWY-5723 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G269500 0.5kb upstream 0.5kb upstream 1617 true scaffold_3: 24069247-24070863 Setaria italica
Seita.3G269500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 24069247-24069746 Setaria italica
Seita.3G269500 0.5kb downstream 0.5kb downstream 1617 true scaffold_3: 24069747-24071363 Setaria italica
Seita.3G269500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 24070864-24071363 Setaria italica
Seita.3G269500 1.0kb upstream 1.0kb upstream 2117 true scaffold_3: 24068747-24070863 Setaria italica
Seita.3G269500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 24068747-24069746 Setaria italica
Seita.3G269500 1.0kb downstream 1.0kb downstream 2117 true scaffold_3: 24069747-24071863 Setaria italica
Seita.3G269500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 24070864-24071863 Setaria italica
Seita.3G269500 2.0kb upstream 2.0kb upstream 3117 true scaffold_3: 24067747-24070863 Setaria italica
Seita.3G269500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 24067747-24069746 Setaria italica
Seita.3G269500 2.0kb downstream 2.0kb downstream 3117 true scaffold_3: 24069747-24072863 Setaria italica
Seita.3G269500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 24070864-24072863 Setaria italica
Seita.3G269500 5.0kb upstream 5.0kb upstream 6117 true scaffold_3: 24064747-24070863 Setaria italica
Seita.3G269500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 24064747-24069746 Setaria italica
Seita.3G269500 5.0kb downstream 5.0kb downstream 6117 true scaffold_3: 24069747-24075863 Setaria italica
Seita.3G269500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 24070864-24075863 Setaria italica
Seita.3G269500 10.0kb upstream 10.0kb upstream 11117 true scaffold_3: 24059747-24070863 Setaria italica
Seita.3G269500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 24059747-24069746 Setaria italica
Seita.3G269500 10.0kb downstream 10.0kb downstream 11117 true scaffold_3: 24069747-24080863 Setaria italica
Seita.3G269500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 24070864-24080863 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199516 5267 Panicoideae View MSA
124590513 5269 Grass View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 309.969     High  
cufflinks 733.686     High  
cufflinks 316.469     High  
cufflinks 451.913     High  
cufflinks 1835.56     High  
cufflinks 602.158     High  
cufflinks 1201.983     High  
cufflinks 1370.734     High  
cufflinks 2311.895     High  
cufflinks 145.281     High  
cufflinks 184.82     High  
cufflinks 0.626       Low
cufflinks 19.744     High  
cufflinks 140.945     High  
cufflinks 0.01     Low Low
cufflinks 659.015     High  
cufflinks 0.626       Low
cufflinks 200.499     High  
cufflinks 410.147     High  
cufflinks 0.046     Low Low

0 Strain