Gene : Seita.3G269800 S. italica v2.2
Defline:  (1 of 4) 2.7.6.2 - Thiamine diphosphokinase / Thiamine pyrophosphokinase Genomic Order:  2698
Name:  ? Seita.3G269800 Secondary Identifier:  ? PAC:32711755
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6908 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G269800 0.5kb upstream 0.5kb upstream 4171 true scaffold_3: 24158513-24162683 Setaria italica
Seita.3G269800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 24158513-24159012 Setaria italica
Seita.3G269800 0.5kb downstream 0.5kb downstream 4171 true scaffold_3: 24159013-24163183 Setaria italica
Seita.3G269800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 24162684-24163183 Setaria italica
Seita.3G269800 1.0kb upstream 1.0kb upstream 4671 true scaffold_3: 24158013-24162683 Setaria italica
Seita.3G269800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 24158013-24159012 Setaria italica
Seita.3G269800 1.0kb downstream 1.0kb downstream 4671 true scaffold_3: 24159013-24163683 Setaria italica
Seita.3G269800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 24162684-24163683 Setaria italica
Seita.3G269800 2.0kb upstream 2.0kb upstream 5671 true scaffold_3: 24157013-24162683 Setaria italica
Seita.3G269800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 24157013-24159012 Setaria italica
Seita.3G269800 2.0kb downstream 2.0kb downstream 5671 true scaffold_3: 24159013-24164683 Setaria italica
Seita.3G269800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 24162684-24164683 Setaria italica
Seita.3G269800 5.0kb upstream 5.0kb upstream 8671 true scaffold_3: 24154013-24162683 Setaria italica
Seita.3G269800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 24154013-24159012 Setaria italica
Seita.3G269800 5.0kb downstream 5.0kb downstream 8671 true scaffold_3: 24159013-24167683 Setaria italica
Seita.3G269800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 24162684-24167683 Setaria italica
Seita.3G269800 10.0kb upstream 10.0kb upstream 13671 true scaffold_3: 24149013-24162683 Setaria italica
Seita.3G269800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 24149013-24159012 Setaria italica
Seita.3G269800 10.0kb downstream 10.0kb downstream 13671 true scaffold_3: 24159013-24172683 Setaria italica
Seita.3G269800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 24162684-24172683 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177462 5267 Panicoideae View MSA
124570032 5269 Grass View MSA
122046316 5273 Angiosperm View MSA
121345006 5274 Embryophyte View MSA
123424730 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.761        
cufflinks 0.957        
cufflinks 0.182       Low
cufflinks 0.213       Low
cufflinks 0.427        
cufflinks 0.999        
cufflinks 0.565        
cufflinks 0.795        
cufflinks 0.5        
cufflinks 2.067       High
cufflinks 1.22        
cufflinks 2.07       High
cufflinks 1.349        
cufflinks 0.393        
cufflinks 1.238        
cufflinks 0.223       Low
cufflinks 2.005       High
cufflinks 0.862        
cufflinks 0.393        
cufflinks 1.565        

0 Strain