Gene : Seita.3G269600 S. italica v2.2
Defline:  (1 of 7) 4.1.1.39 - Ribulose-bisphosphate carboxylase / RuBP carboxylase Genomic Order:  2696
Name:  ? Seita.3G269600 Secondary Identifier:  ? PAC:32714399
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CALVIN-PWY Setaria italica pathologic  
Sitalica PHOTOALL-PWY Setaria italica pathologic  
Sitalica PWY-5723 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G269600 0.5kb upstream 0.5kb upstream 1536 true scaffold_3: 24102150-24103685 Setaria italica
Seita.3G269600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 24102150-24102649 Setaria italica
Seita.3G269600 0.5kb downstream 0.5kb downstream 1536 true scaffold_3: 24102650-24104185 Setaria italica
Seita.3G269600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 24103686-24104185 Setaria italica
Seita.3G269600 1.0kb upstream 1.0kb upstream 2036 true scaffold_3: 24101650-24103685 Setaria italica
Seita.3G269600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 24101650-24102649 Setaria italica
Seita.3G269600 1.0kb downstream 1.0kb downstream 2036 true scaffold_3: 24102650-24104685 Setaria italica
Seita.3G269600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 24103686-24104685 Setaria italica
Seita.3G269600 2.0kb upstream 2.0kb upstream 3036 true scaffold_3: 24100650-24103685 Setaria italica
Seita.3G269600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 24100650-24102649 Setaria italica
Seita.3G269600 2.0kb downstream 2.0kb downstream 3036 true scaffold_3: 24102650-24105685 Setaria italica
Seita.3G269600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 24103686-24105685 Setaria italica
Seita.3G269600 5.0kb upstream 5.0kb upstream 6036 true scaffold_3: 24097650-24103685 Setaria italica
Seita.3G269600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 24097650-24102649 Setaria italica
Seita.3G269600 5.0kb downstream 5.0kb downstream 6036 true scaffold_3: 24102650-24108685 Setaria italica
Seita.3G269600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 24103686-24108685 Setaria italica
Seita.3G269600 10.0kb upstream 10.0kb upstream 11036 true scaffold_3: 24092650-24103685 Setaria italica
Seita.3G269600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 24092650-24102649 Setaria italica
Seita.3G269600 10.0kb downstream 10.0kb downstream 11036 true scaffold_3: 24102650-24113685 Setaria italica
Seita.3G269600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 24103686-24113685 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199516 5267 Panicoideae View MSA
124590513 5269 Grass View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 169.331     High  
cufflinks 423.431     High  
cufflinks 1344.241     High  
cufflinks 1984.537     High  
cufflinks 3632.689     High  
cufflinks 279.099     High  
cufflinks 1581.445     High  
cufflinks 2044.964     High  
cufflinks 2586.536     High  
cufflinks 42.597     High  
cufflinks 67.051     High  
cufflinks 0.671       Low
cufflinks 8.013        
cufflinks 384.419     High  
cufflinks 0.197       Low
cufflinks 1407.621     High  
cufflinks 0.103     Low Low
cufflinks 212.609     High  
cufflinks 1684.985     High  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain