Gene : Seita.3G274000 S. italica v2.2
Defline:  (1 of 2) PTHR31998:SF11 - PYROPHOSPHATE-ENERGIZED MEMBRANE PROTON PUMP 2-RELATED Genomic Order:  2740
Name:  ? Seita.3G274000 Secondary Identifier:  ? PAC:32710635
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G274000 0.5kb upstream 0.5kb upstream 9015 true scaffold_3: 24858409-24867423 Setaria italica
Seita.3G274000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 24866924-24867423 Setaria italica
Seita.3G274000 0.5kb downstream 0.5kb downstream 9015 true scaffold_3: 24857909-24866923 Setaria italica
Seita.3G274000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 24857909-24858408 Setaria italica
Seita.3G274000 1.0kb upstream 1.0kb upstream 9515 true scaffold_3: 24858409-24867923 Setaria italica
Seita.3G274000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 24866924-24867923 Setaria italica
Seita.3G274000 1.0kb downstream 1.0kb downstream 9515 true scaffold_3: 24857409-24866923 Setaria italica
Seita.3G274000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 24857409-24858408 Setaria italica
Seita.3G274000 2.0kb upstream 2.0kb upstream 10515 true scaffold_3: 24858409-24868923 Setaria italica
Seita.3G274000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 24866924-24868923 Setaria italica
Seita.3G274000 2.0kb downstream 2.0kb downstream 10515 true scaffold_3: 24856409-24866923 Setaria italica
Seita.3G274000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 24856409-24858408 Setaria italica
Seita.3G274000 5.0kb upstream 5.0kb upstream 13515 true scaffold_3: 24858409-24871923 Setaria italica
Seita.3G274000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 24866924-24871923 Setaria italica
Seita.3G274000 5.0kb downstream 5.0kb downstream 13515 true scaffold_3: 24853409-24866923 Setaria italica
Seita.3G274000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 24853409-24858408 Setaria italica
Seita.3G274000 10.0kb upstream 10.0kb upstream 18515 true scaffold_3: 24858409-24876923 Setaria italica
Seita.3G274000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 24866924-24876923 Setaria italica
Seita.3G274000 10.0kb downstream 10.0kb downstream 18515 true scaffold_3: 24848409-24866923 Setaria italica
Seita.3G274000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 24848409-24858408 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198953 5267 Panicoideae View MSA
124583219 5269 Grass View MSA
122044345 5273 Angiosperm View MSA
121350028 5274 Embryophyte View MSA
123424450 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.591       High
cufflinks 12.295       High
cufflinks 5.92        
cufflinks 4.358       Low
cufflinks 4.662       Low
cufflinks 10.953        
cufflinks 8.695        
cufflinks 7.206        
cufflinks 6.349        
cufflinks 7.064        
cufflinks 11.768       High
cufflinks 9.908        
cufflinks 8.076        
cufflinks 6.552        
cufflinks 13.138       High
cufflinks 6.247        
cufflinks 9.601        
cufflinks 6.886        
cufflinks 5.659       Low
cufflinks 10.627        

0 Strain