Gene : Seita.3G278800 S. italica v2.2
Defline:  (1 of 2) PTHR31576:SF2 - TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B Genomic Order:  2788
Name:  ? Seita.3G278800 Secondary Identifier:  ? PAC:32713463
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G278800 0.5kb upstream 0.5kb upstream 3926 true scaffold_3: 25556074-25559999 Setaria italica
Seita.3G278800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 25556074-25556573 Setaria italica
Seita.3G278800 0.5kb downstream 0.5kb downstream 3926 true scaffold_3: 25556574-25560499 Setaria italica
Seita.3G278800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 25560000-25560499 Setaria italica
Seita.3G278800 1.0kb upstream 1.0kb upstream 4426 true scaffold_3: 25555574-25559999 Setaria italica
Seita.3G278800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 25555574-25556573 Setaria italica
Seita.3G278800 1.0kb downstream 1.0kb downstream 4426 true scaffold_3: 25556574-25560999 Setaria italica
Seita.3G278800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 25560000-25560999 Setaria italica
Seita.3G278800 2.0kb upstream 2.0kb upstream 5426 true scaffold_3: 25554574-25559999 Setaria italica
Seita.3G278800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 25554574-25556573 Setaria italica
Seita.3G278800 2.0kb downstream 2.0kb downstream 5426 true scaffold_3: 25556574-25561999 Setaria italica
Seita.3G278800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 25560000-25561999 Setaria italica
Seita.3G278800 5.0kb upstream 5.0kb upstream 8426 true scaffold_3: 25551574-25559999 Setaria italica
Seita.3G278800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 25551574-25556573 Setaria italica
Seita.3G278800 5.0kb downstream 5.0kb downstream 8426 true scaffold_3: 25556574-25564999 Setaria italica
Seita.3G278800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 25560000-25564999 Setaria italica
Seita.3G278800 10.0kb upstream 10.0kb upstream 13426 true scaffold_3: 25546574-25559999 Setaria italica
Seita.3G278800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 25546574-25556573 Setaria italica
Seita.3G278800 10.0kb downstream 10.0kb downstream 13426 true scaffold_3: 25556574-25569999 Setaria italica
Seita.3G278800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 25560000-25569999 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196702 5267 Panicoideae View MSA
124588651 5269 Grass View MSA
122050673 5273 Angiosperm View MSA
121345414 5274 Embryophyte View MSA
123427215 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.355        
cufflinks 0.54       High
cufflinks 0.066     Low Low
cufflinks 0.064     Low Low
cufflinks 0.049     Low Low
cufflinks 0.419       High
cufflinks 0.07     Low Low
cufflinks 0.214        
cufflinks 0.179        
cufflinks 0.105     Low  
cufflinks 0.346        
cufflinks 0.223        
cufflinks 0.351        
cufflinks 0.217        
cufflinks 0.415       High
cufflinks 0.122        
cufflinks 0.314        
cufflinks 0.115        
cufflinks 0.045     Low Low
cufflinks 0.24        

0 Strain