Gene : Seita.3G282800 S. italica v2.2
Defline:  (1 of 42) PF04525 - LURP-one-related (LOR) Genomic Order:  2828
Name:  ? Seita.3G282800 Secondary Identifier:  ? PAC:32710199
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G282800 0.5kb upstream 0.5kb upstream 4079 true scaffold_3: 26500480-26504558 Setaria italica
Seita.3G282800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 26504059-26504558 Setaria italica
Seita.3G282800 0.5kb downstream 0.5kb downstream 4079 true scaffold_3: 26499980-26504058 Setaria italica
Seita.3G282800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 26499980-26500479 Setaria italica
Seita.3G282800 1.0kb upstream 1.0kb upstream 4579 true scaffold_3: 26500480-26505058 Setaria italica
Seita.3G282800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 26504059-26505058 Setaria italica
Seita.3G282800 1.0kb downstream 1.0kb downstream 4579 true scaffold_3: 26499480-26504058 Setaria italica
Seita.3G282800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 26499480-26500479 Setaria italica
Seita.3G282800 2.0kb upstream 2.0kb upstream 5579 true scaffold_3: 26500480-26506058 Setaria italica
Seita.3G282800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 26504059-26506058 Setaria italica
Seita.3G282800 2.0kb downstream 2.0kb downstream 5579 true scaffold_3: 26498480-26504058 Setaria italica
Seita.3G282800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 26498480-26500479 Setaria italica
Seita.3G282800 5.0kb upstream 5.0kb upstream 8579 true scaffold_3: 26500480-26509058 Setaria italica
Seita.3G282800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 26504059-26509058 Setaria italica
Seita.3G282800 5.0kb downstream 5.0kb downstream 8579 true scaffold_3: 26495480-26504058 Setaria italica
Seita.3G282800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 26495480-26500479 Setaria italica
Seita.3G282800 10.0kb upstream 10.0kb upstream 13579 true scaffold_3: 26500480-26514058 Setaria italica
Seita.3G282800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 26504059-26514058 Setaria italica
Seita.3G282800 10.0kb downstream 10.0kb downstream 13579 true scaffold_3: 26490480-26504058 Setaria italica
Seita.3G282800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 26490480-26500479 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187032 5267 Panicoideae View MSA
124587910 5269 Grass View MSA
122049956 5273 Angiosperm View MSA
121351653 5274 Embryophyte View MSA
123382260 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.995        
cufflinks 0.591       Low
cufflinks 1.405        
cufflinks 2.008        
cufflinks 1.296        
cufflinks 0.76       Low
cufflinks 0.883        
cufflinks 1.136        
cufflinks 0.583       Low
cufflinks 1.415        
cufflinks 1.015        
cufflinks 2.341       High
cufflinks 2.746       High
cufflinks 1.746        
cufflinks 1.891        
cufflinks 0.873        
cufflinks 1.621        
cufflinks 2.099       High
cufflinks 1.791        
cufflinks 1.315        

0 Strain