Gene : Seita.3G283900 S. italica v2.2
Defline:  (1 of 2) PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Genomic Order:  2839
Name:  ? Seita.3G283900 Secondary Identifier:  ? PAC:32710366
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G283900 0.5kb upstream 0.5kb upstream 5523 true scaffold_3: 26620157-26625679 Setaria italica
Seita.3G283900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 26620157-26620656 Setaria italica
Seita.3G283900 0.5kb downstream 0.5kb downstream 5523 true scaffold_3: 26620657-26626179 Setaria italica
Seita.3G283900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 26625680-26626179 Setaria italica
Seita.3G283900 1.0kb upstream 1.0kb upstream 6023 true scaffold_3: 26619657-26625679 Setaria italica
Seita.3G283900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 26619657-26620656 Setaria italica
Seita.3G283900 1.0kb downstream 1.0kb downstream 6023 true scaffold_3: 26620657-26626679 Setaria italica
Seita.3G283900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 26625680-26626679 Setaria italica
Seita.3G283900 2.0kb upstream 2.0kb upstream 7023 true scaffold_3: 26618657-26625679 Setaria italica
Seita.3G283900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 26618657-26620656 Setaria italica
Seita.3G283900 2.0kb downstream 2.0kb downstream 7023 true scaffold_3: 26620657-26627679 Setaria italica
Seita.3G283900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 26625680-26627679 Setaria italica
Seita.3G283900 5.0kb upstream 5.0kb upstream 10023 true scaffold_3: 26615657-26625679 Setaria italica
Seita.3G283900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 26615657-26620656 Setaria italica
Seita.3G283900 5.0kb downstream 5.0kb downstream 10023 true scaffold_3: 26620657-26630679 Setaria italica
Seita.3G283900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 26625680-26630679 Setaria italica
Seita.3G283900 10.0kb upstream 10.0kb upstream 15023 true scaffold_3: 26610657-26625679 Setaria italica
Seita.3G283900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 26610657-26620656 Setaria italica
Seita.3G283900 10.0kb downstream 10.0kb downstream 15023 true scaffold_3: 26620657-26635679 Setaria italica
Seita.3G283900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 26625680-26635679 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198054 5267 Panicoideae View MSA
124572004 5269 Grass View MSA
122048196 5273 Angiosperm View MSA
121346372 5274 Embryophyte View MSA
123427883 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.901     High  
cufflinks 27.863     High  
cufflinks 10.281        
cufflinks 2.346        
cufflinks 35.157     High  
cufflinks 25.771     High  
cufflinks 96.224     High High
cufflinks 119.203     High High
cufflinks 281.065     High High
cufflinks 11.627        
cufflinks 25.482     High  
cufflinks 0.597       Low
cufflinks 3.223        
cufflinks 32.293     High  
cufflinks 2.132        
cufflinks 34.796     High  
cufflinks 0.671       Low
cufflinks 12.538     High  
cufflinks 4.004        
cufflinks 1.04       Low

0 Strain