Gene : Seita.3G289400 S. italica v2.2
Defline:  (1 of 1) PTHR15852:SF20 - CHAPERONE PROTEIN DNAJ-LIKE PROTEIN Genomic Order:  2894
Name:  ? Seita.3G289400 Secondary Identifier:  ? PAC:32712515
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G289400 0.5kb upstream 0.5kb upstream 6128 true scaffold_3: 27773388-27779515 Setaria italica
Seita.3G289400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 27779016-27779515 Setaria italica
Seita.3G289400 0.5kb downstream 0.5kb downstream 6128 true scaffold_3: 27772888-27779015 Setaria italica
Seita.3G289400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 27772888-27773387 Setaria italica
Seita.3G289400 1.0kb upstream 1.0kb upstream 6628 true scaffold_3: 27773388-27780015 Setaria italica
Seita.3G289400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 27779016-27780015 Setaria italica
Seita.3G289400 1.0kb downstream 1.0kb downstream 6628 true scaffold_3: 27772388-27779015 Setaria italica
Seita.3G289400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 27772388-27773387 Setaria italica
Seita.3G289400 2.0kb upstream 2.0kb upstream 7628 true scaffold_3: 27773388-27781015 Setaria italica
Seita.3G289400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 27779016-27781015 Setaria italica
Seita.3G289400 2.0kb downstream 2.0kb downstream 7628 true scaffold_3: 27771388-27779015 Setaria italica
Seita.3G289400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 27771388-27773387 Setaria italica
Seita.3G289400 5.0kb upstream 5.0kb upstream 10628 true scaffold_3: 27773388-27784015 Setaria italica
Seita.3G289400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 27779016-27784015 Setaria italica
Seita.3G289400 5.0kb downstream 5.0kb downstream 10628 true scaffold_3: 27768388-27779015 Setaria italica
Seita.3G289400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 27768388-27773387 Setaria italica
Seita.3G289400 10.0kb upstream 10.0kb upstream 15628 true scaffold_3: 27773388-27789015 Setaria italica
Seita.3G289400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 27779016-27789015 Setaria italica
Seita.3G289400 10.0kb downstream 10.0kb downstream 15628 true scaffold_3: 27763388-27779015 Setaria italica
Seita.3G289400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 27763388-27773387 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186546 5267 Panicoideae View MSA
124570658 5269 Grass View MSA
122044241 5273 Angiosperm View MSA
121346623 5274 Embryophyte View MSA
123380417 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.494     High  
cufflinks 14.936     High  
cufflinks 10.382        
cufflinks 13.854     High  
cufflinks 11.86     High  
cufflinks 12.856        
cufflinks 12.648        
cufflinks 8.63       Low
cufflinks 9.282        
cufflinks 16.328     High  
cufflinks 16.902     High  
cufflinks 60.654     High High
cufflinks 24.745     High  
cufflinks 8.67       Low
cufflinks 14.21     High  
cufflinks 23.41     High  
cufflinks 15.25     High  
cufflinks 90.087     High High
cufflinks 10.76        
cufflinks 17.495     High  

0 Strain