Gene : Seita.3G291200 S. italica v2.2
Defline:  (1 of 1) PTHR23324//PTHR23324:SF45 - SEC14 RELATED PROTEIN Genomic Order:  2912
Name:  ? Seita.3G291200 Secondary Identifier:  ? PAC:32710292
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G291200 0.5kb upstream 0.5kb upstream 17292 true scaffold_3: 28495383-28512674 Setaria italica
Seita.3G291200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 28495383-28495882 Setaria italica
Seita.3G291200 0.5kb downstream 0.5kb downstream 17292 true scaffold_3: 28495883-28513174 Setaria italica
Seita.3G291200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 28512675-28513174 Setaria italica
Seita.3G291200 1.0kb upstream 1.0kb upstream 17792 true scaffold_3: 28494883-28512674 Setaria italica
Seita.3G291200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 28494883-28495882 Setaria italica
Seita.3G291200 1.0kb downstream 1.0kb downstream 17792 true scaffold_3: 28495883-28513674 Setaria italica
Seita.3G291200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 28512675-28513674 Setaria italica
Seita.3G291200 2.0kb upstream 2.0kb upstream 18792 true scaffold_3: 28493883-28512674 Setaria italica
Seita.3G291200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 28493883-28495882 Setaria italica
Seita.3G291200 2.0kb downstream 2.0kb downstream 18792 true scaffold_3: 28495883-28514674 Setaria italica
Seita.3G291200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 28512675-28514674 Setaria italica
Seita.3G291200 5.0kb upstream 5.0kb upstream 21792 true scaffold_3: 28490883-28512674 Setaria italica
Seita.3G291200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 28490883-28495882 Setaria italica
Seita.3G291200 5.0kb downstream 5.0kb downstream 21792 true scaffold_3: 28495883-28517674 Setaria italica
Seita.3G291200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 28512675-28517674 Setaria italica
Seita.3G291200 10.0kb upstream 10.0kb upstream 26792 true scaffold_3: 28485883-28512674 Setaria italica
Seita.3G291200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 28485883-28495882 Setaria italica
Seita.3G291200 10.0kb downstream 10.0kb downstream 26792 true scaffold_3: 28495883-28522674 Setaria italica
Seita.3G291200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 28512675-28522674 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026525 5273 Angiosperm View MSA
122190458 5267 Panicoideae View MSA
124568724 5269 Grass View MSA
121346667 5274 Embryophyte View MSA
123426655 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.423        
cufflinks 2.126        
cufflinks 1.703        
cufflinks 1.321       Low
cufflinks 0.963       Low
cufflinks 1.86        
cufflinks 1.648        
cufflinks 1.662        
cufflinks 1.347       Low
cufflinks 2.341        
cufflinks 2.52        
cufflinks 3.011       High
cufflinks 2.831       High
cufflinks 2.139        
cufflinks 3.196       High
cufflinks 1.731        
cufflinks 2.547        
cufflinks 3.173       High
cufflinks 1.312       Low
cufflinks 2.554        

0 Strain