Gene : Seita.3G293700 S. italica v2.2
Defline:  (1 of 1) PTHR12694 - TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 Genomic Order:  2937
Name:  ? Seita.3G293700 Secondary Identifier:  ? PAC:32710810
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G293700 0.5kb upstream 0.5kb upstream 8731 true scaffold_3: 30121013-30129743 Setaria italica
Seita.3G293700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 30121013-30121512 Setaria italica
Seita.3G293700 0.5kb downstream 0.5kb downstream 8731 true scaffold_3: 30121513-30130243 Setaria italica
Seita.3G293700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 30129744-30130243 Setaria italica
Seita.3G293700 1.0kb upstream 1.0kb upstream 9231 true scaffold_3: 30120513-30129743 Setaria italica
Seita.3G293700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 30120513-30121512 Setaria italica
Seita.3G293700 1.0kb downstream 1.0kb downstream 9231 true scaffold_3: 30121513-30130743 Setaria italica
Seita.3G293700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 30129744-30130743 Setaria italica
Seita.3G293700 2.0kb upstream 2.0kb upstream 10231 true scaffold_3: 30119513-30129743 Setaria italica
Seita.3G293700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 30119513-30121512 Setaria italica
Seita.3G293700 2.0kb downstream 2.0kb downstream 10231 true scaffold_3: 30121513-30131743 Setaria italica
Seita.3G293700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 30129744-30131743 Setaria italica
Seita.3G293700 5.0kb upstream 5.0kb upstream 13231 true scaffold_3: 30116513-30129743 Setaria italica
Seita.3G293700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 30116513-30121512 Setaria italica
Seita.3G293700 5.0kb downstream 5.0kb downstream 13231 true scaffold_3: 30121513-30134743 Setaria italica
Seita.3G293700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 30129744-30134743 Setaria italica
Seita.3G293700 10.0kb upstream 10.0kb upstream 18231 true scaffold_3: 30111513-30129743 Setaria italica
Seita.3G293700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 30111513-30121512 Setaria italica
Seita.3G293700 10.0kb downstream 10.0kb downstream 18231 true scaffold_3: 30121513-30139743 Setaria italica
Seita.3G293700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 30129744-30139743 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195191 5267 Panicoideae View MSA
124578840 5269 Grass View MSA
122049718 5273 Angiosperm View MSA
121345222 5274 Embryophyte View MSA
123426505 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.887        
cufflinks 14.233     High  
cufflinks 12.755     High  
cufflinks 11.589     High  
cufflinks 11.155     High  
cufflinks 15.673     High High
cufflinks 12.144        
cufflinks 14.579     High High
cufflinks 11.098        
cufflinks 12.405        
cufflinks 10.377        
cufflinks 15.285     High High
cufflinks 9.525       Low
cufflinks 12.507        
cufflinks 13.778        
cufflinks 9.231       Low
cufflinks 13.948        
cufflinks 8.174       Low
cufflinks 11.601     High  
cufflinks 14.483     High High

0 Strain