Gene : Seita.3G294100 S. italica v2.2
Defline:  (1 of 1) PTHR21290//PTHR21290:SF33 - SPHINGOMYELIN SYNTHETASE Genomic Order:  2941
Name:  ? Seita.3G294100 Secondary Identifier:  ? PAC:32712489
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G294100 0.5kb upstream 0.5kb upstream 3628 true scaffold_3: 30266291-30269918 Setaria italica
Seita.3G294100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 30266291-30266790 Setaria italica
Seita.3G294100 0.5kb downstream 0.5kb downstream 3628 true scaffold_3: 30266791-30270418 Setaria italica
Seita.3G294100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 30269919-30270418 Setaria italica
Seita.3G294100 1.0kb upstream 1.0kb upstream 4128 true scaffold_3: 30265791-30269918 Setaria italica
Seita.3G294100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 30265791-30266790 Setaria italica
Seita.3G294100 1.0kb downstream 1.0kb downstream 4128 true scaffold_3: 30266791-30270918 Setaria italica
Seita.3G294100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 30269919-30270918 Setaria italica
Seita.3G294100 2.0kb upstream 2.0kb upstream 5128 true scaffold_3: 30264791-30269918 Setaria italica
Seita.3G294100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 30264791-30266790 Setaria italica
Seita.3G294100 2.0kb downstream 2.0kb downstream 5128 true scaffold_3: 30266791-30271918 Setaria italica
Seita.3G294100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 30269919-30271918 Setaria italica
Seita.3G294100 5.0kb upstream 5.0kb upstream 8128 true scaffold_3: 30261791-30269918 Setaria italica
Seita.3G294100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 30261791-30266790 Setaria italica
Seita.3G294100 5.0kb downstream 5.0kb downstream 8128 true scaffold_3: 30266791-30274918 Setaria italica
Seita.3G294100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 30269919-30274918 Setaria italica
Seita.3G294100 10.0kb upstream 10.0kb upstream 13128 true scaffold_3: 30256791-30269918 Setaria italica
Seita.3G294100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 30256791-30266790 Setaria italica
Seita.3G294100 10.0kb downstream 10.0kb downstream 13128 true scaffold_3: 30266791-30279918 Setaria italica
Seita.3G294100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 30269919-30279918 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181220 5267 Panicoideae View MSA
124569104 5269 Grass View MSA
122046269 5273 Angiosperm View MSA
121346433 5274 Embryophyte View MSA
123427335 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.456     High  
cufflinks 8.636       Low
cufflinks 14.351     High Low
cufflinks 20.496     High  
cufflinks 34.446     High  
cufflinks 9.188       Low
cufflinks 25.372     High  
cufflinks 16.603     High  
cufflinks 45.535     High High
cufflinks 26.637     High  
cufflinks 22.15     High  
cufflinks 35.581     High  
cufflinks 22.43     High  
cufflinks 46.628     High High
cufflinks 26.976     High  
cufflinks 15.014     High  
cufflinks 27.046     High  
cufflinks 33.025     High  
cufflinks 23.056     High  
cufflinks 26.102     High  

0 Strain