Gene : Seita.3G298800 S. italica v2.2
Defline:  (1 of 1) 2.5.1.30 - Heptaprenyl diphosphate synthase / Trans-hexaprenyltranstransferase Genomic Order:  2988
Name:  ? Seita.3G298800 Secondary Identifier:  ? PAC:32714219
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica HEXPPSYN-PWY Setaria italica pathologic  
Sitalica PWY-5120 Setaria italica pathologic  
Sitalica PWY-5783 Setaria italica pathologic  
Sitalica PWY-5805 Setaria italica pathologic  
Sitalica PWY-5807 Setaria italica pathologic  
Sitalica PWY-5910 Setaria italica pathologic  
Sitalica PWY-6520 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G298800 0.5kb upstream 0.5kb upstream 4602 true scaffold_3: 33676490-33681091 Setaria italica
Seita.3G298800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 33680592-33681091 Setaria italica
Seita.3G298800 0.5kb downstream 0.5kb downstream 4602 true scaffold_3: 33675990-33680591 Setaria italica
Seita.3G298800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 33675990-33676489 Setaria italica
Seita.3G298800 1.0kb upstream 1.0kb upstream 5102 true scaffold_3: 33676490-33681591 Setaria italica
Seita.3G298800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 33680592-33681591 Setaria italica
Seita.3G298800 1.0kb downstream 1.0kb downstream 5102 true scaffold_3: 33675490-33680591 Setaria italica
Seita.3G298800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 33675490-33676489 Setaria italica
Seita.3G298800 2.0kb upstream 2.0kb upstream 6102 true scaffold_3: 33676490-33682591 Setaria italica
Seita.3G298800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 33680592-33682591 Setaria italica
Seita.3G298800 2.0kb downstream 2.0kb downstream 6102 true scaffold_3: 33674490-33680591 Setaria italica
Seita.3G298800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 33674490-33676489 Setaria italica
Seita.3G298800 5.0kb upstream 5.0kb upstream 9102 true scaffold_3: 33676490-33685591 Setaria italica
Seita.3G298800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 33680592-33685591 Setaria italica
Seita.3G298800 5.0kb downstream 5.0kb downstream 9102 true scaffold_3: 33671490-33680591 Setaria italica
Seita.3G298800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 33671490-33676489 Setaria italica
Seita.3G298800 10.0kb upstream 10.0kb upstream 14102 true scaffold_3: 33676490-33690591 Setaria italica
Seita.3G298800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 33680592-33690591 Setaria italica
Seita.3G298800 10.0kb downstream 10.0kb downstream 14102 true scaffold_3: 33666490-33680591 Setaria italica
Seita.3G298800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 33666490-33676489 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041065 5273 Angiosperm View MSA
122182830 5267 Panicoideae View MSA
124570565 5269 Grass View MSA
121345449 5274 Embryophyte View MSA
123424009 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.476        
cufflinks 4.794        
cufflinks 16.037     High  
cufflinks 20.432     High  
cufflinks 45.189     High High
cufflinks 4.826        
cufflinks 28.741     High  
cufflinks 26.887     High  
cufflinks 34.734     High High
cufflinks 1.962        
cufflinks 3.448        
cufflinks 0.478       Low
cufflinks 0.845       Low
cufflinks 10.663        
cufflinks 0.433       Low
cufflinks 48.688     High High
cufflinks 0.698       Low
cufflinks 8.679        
cufflinks 48.999     High High
cufflinks 0.654       Low

0 Strain