Gene : Seita.3G298600 S. italica v2.2
Defline:  (1 of 1) 1.3.99.22 - Coproporphyrinogen dehydrogenase / Oxygen-independent coproporphyrinogen-III oxidase Genomic Order:  2986
Name:  ? Seita.3G298600 Secondary Identifier:  ? PAC:32714414
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G298600 0.5kb upstream 0.5kb upstream 5323 true scaffold_3: 33605373-33610695 Setaria italica
Seita.3G298600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 33610196-33610695 Setaria italica
Seita.3G298600 0.5kb downstream 0.5kb downstream 5323 true scaffold_3: 33604873-33610195 Setaria italica
Seita.3G298600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 33604873-33605372 Setaria italica
Seita.3G298600 1.0kb upstream 1.0kb upstream 5823 true scaffold_3: 33605373-33611195 Setaria italica
Seita.3G298600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 33610196-33611195 Setaria italica
Seita.3G298600 1.0kb downstream 1.0kb downstream 5823 true scaffold_3: 33604373-33610195 Setaria italica
Seita.3G298600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 33604373-33605372 Setaria italica
Seita.3G298600 2.0kb upstream 2.0kb upstream 6823 true scaffold_3: 33605373-33612195 Setaria italica
Seita.3G298600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 33610196-33612195 Setaria italica
Seita.3G298600 2.0kb downstream 2.0kb downstream 6823 true scaffold_3: 33603373-33610195 Setaria italica
Seita.3G298600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 33603373-33605372 Setaria italica
Seita.3G298600 5.0kb upstream 5.0kb upstream 9823 true scaffold_3: 33605373-33615195 Setaria italica
Seita.3G298600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 33610196-33615195 Setaria italica
Seita.3G298600 5.0kb downstream 5.0kb downstream 9823 true scaffold_3: 33600373-33610195 Setaria italica
Seita.3G298600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 33600373-33605372 Setaria italica
Seita.3G298600 10.0kb upstream 10.0kb upstream 14823 true scaffold_3: 33605373-33620195 Setaria italica
Seita.3G298600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 33610196-33620195 Setaria italica
Seita.3G298600 10.0kb downstream 10.0kb downstream 14823 true scaffold_3: 33595373-33610195 Setaria italica
Seita.3G298600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 33595373-33605372 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188542 5267 Panicoideae View MSA
124588418 5269 Grass View MSA
122048362 5273 Angiosperm View MSA
121344861 5274 Embryophyte View MSA
123424755 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.127     Low Low
cufflinks 0.433        
cufflinks 0.773       High
cufflinks 0.582       High
cufflinks 0.401        
cufflinks 0.265        
cufflinks 0.294        
cufflinks 0.589       High
cufflinks 0.621       High
cufflinks 0.211     Low  
cufflinks 0.218        
cufflinks 0.228        
cufflinks 0.137     Low Low
cufflinks 1.085       High
cufflinks 0.169       Low
cufflinks 0.278        
cufflinks 0.223        
cufflinks 0.228        
cufflinks 0.5        
cufflinks 0.219        

0 Strain