Gene : Seita.3G386700 S. italica v2.2
Defline:  (1 of 1) PTHR24031//PTHR24031:SF296 - RNA HELICASE Genomic Order:  3867
Name:  ? Seita.3G386700 Secondary Identifier:  ? PAC:32713632
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G386700 0.5kb upstream 0.5kb upstream 4266 true scaffold_3: 48779043-48783308 Setaria italica
Seita.3G386700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 48782809-48783308 Setaria italica
Seita.3G386700 0.5kb downstream 0.5kb downstream 4266 true scaffold_3: 48778543-48782808 Setaria italica
Seita.3G386700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 48778543-48779042 Setaria italica
Seita.3G386700 1.0kb upstream 1.0kb upstream 4766 true scaffold_3: 48779043-48783808 Setaria italica
Seita.3G386700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 48782809-48783808 Setaria italica
Seita.3G386700 1.0kb downstream 1.0kb downstream 4766 true scaffold_3: 48778043-48782808 Setaria italica
Seita.3G386700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 48778043-48779042 Setaria italica
Seita.3G386700 2.0kb upstream 2.0kb upstream 5766 true scaffold_3: 48779043-48784808 Setaria italica
Seita.3G386700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 48782809-48784808 Setaria italica
Seita.3G386700 2.0kb downstream 2.0kb downstream 5766 true scaffold_3: 48777043-48782808 Setaria italica
Seita.3G386700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 48777043-48779042 Setaria italica
Seita.3G386700 5.0kb upstream 5.0kb upstream 8766 true scaffold_3: 48779043-48787808 Setaria italica
Seita.3G386700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 48782809-48787808 Setaria italica
Seita.3G386700 5.0kb downstream 5.0kb downstream 8766 true scaffold_3: 48774043-48782808 Setaria italica
Seita.3G386700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 48774043-48779042 Setaria italica
Seita.3G386700 10.0kb upstream 10.0kb upstream 13766 true scaffold_3: 48779043-48792808 Setaria italica
Seita.3G386700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 48782809-48792808 Setaria italica
Seita.3G386700 10.0kb downstream 10.0kb downstream 13766 true scaffold_3: 48769043-48782808 Setaria italica
Seita.3G386700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 48769043-48779042 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179934 5267 Panicoideae View MSA
124583267 5269 Grass View MSA
122044594 5273 Angiosperm View MSA
121310318 5274 Embryophyte View MSA
123426449 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.541     High  
cufflinks 90.341     High High
cufflinks 57.001     High  
cufflinks 41.774     High  
cufflinks 48.626     High  
cufflinks 101.534     High High
cufflinks 33.382     High Low
cufflinks 55.111     High  
cufflinks 60.217     High  
cufflinks 31.246     High Low
cufflinks 57.245     High  
cufflinks 74.319     High  
cufflinks 38.84     High  
cufflinks 93.303     High High
cufflinks 71.125     High  
cufflinks 33.999     High Low
cufflinks 82.339     High High
cufflinks 59.409     High  
cufflinks 30.954     High Low
cufflinks 68.375     High  

0 Strain