Gene : Seita.3G391500 S. italica v2.2
Defline:  (1 of 1) PTHR22939:SF76 - PROTEASE DO-LIKE 5, CHLOROPLASTIC Genomic Order:  3915
Name:  ? Seita.3G391500 Secondary Identifier:  ? PAC:32711947
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G391500 0.5kb upstream 0.5kb upstream 4716 true scaffold_3: 49279838-49284553 Setaria italica
Seita.3G391500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 49284054-49284553 Setaria italica
Seita.3G391500 0.5kb downstream 0.5kb downstream 4716 true scaffold_3: 49279338-49284053 Setaria italica
Seita.3G391500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 49279338-49279837 Setaria italica
Seita.3G391500 1.0kb upstream 1.0kb upstream 5216 true scaffold_3: 49279838-49285053 Setaria italica
Seita.3G391500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 49284054-49285053 Setaria italica
Seita.3G391500 1.0kb downstream 1.0kb downstream 5216 true scaffold_3: 49278838-49284053 Setaria italica
Seita.3G391500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 49278838-49279837 Setaria italica
Seita.3G391500 2.0kb upstream 2.0kb upstream 6216 true scaffold_3: 49279838-49286053 Setaria italica
Seita.3G391500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 49284054-49286053 Setaria italica
Seita.3G391500 2.0kb downstream 2.0kb downstream 6216 true scaffold_3: 49277838-49284053 Setaria italica
Seita.3G391500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 49277838-49279837 Setaria italica
Seita.3G391500 5.0kb upstream 5.0kb upstream 9216 true scaffold_3: 49279838-49289053 Setaria italica
Seita.3G391500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 49284054-49289053 Setaria italica
Seita.3G391500 5.0kb downstream 5.0kb downstream 9216 true scaffold_3: 49274838-49284053 Setaria italica
Seita.3G391500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 49274838-49279837 Setaria italica
Seita.3G391500 10.0kb upstream 10.0kb upstream 14216 true scaffold_3: 49279838-49294053 Setaria italica
Seita.3G391500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 49284054-49294053 Setaria italica
Seita.3G391500 10.0kb downstream 10.0kb downstream 14216 true scaffold_3: 49269838-49284053 Setaria italica
Seita.3G391500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 49269838-49279837 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178587 5267 Panicoideae View MSA
124570024 5269 Grass View MSA
122044835 5273 Angiosperm View MSA
121347205 5274 Embryophyte View MSA
123425899 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.117        
cufflinks 2.784        
cufflinks 2.107        
cufflinks 1.449        
cufflinks 4.774        
cufflinks 2.866        
cufflinks 4.683        
cufflinks 7.33       High
cufflinks 8.553       High
cufflinks 2.209        
cufflinks 1.93        
cufflinks 0.192       Low
cufflinks 0.572       Low
cufflinks 2.778        
cufflinks 0.338       Low
cufflinks 4.77        
cufflinks 0.426       Low
cufflinks 2.538        
cufflinks 1.3        
cufflinks 0.317       Low

0 Strain