Gene : Seita.3G393800 S. italica v2.2
Defline:  (1 of 2) PTHR22536 - LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN Genomic Order:  3938
Name:  ? Seita.3G393800 Secondary Identifier:  ? PAC:32711725
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G393800 0.5kb upstream 0.5kb upstream 7303 true scaffold_3: 49510935-49518237 Setaria italica
Seita.3G393800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 49517738-49518237 Setaria italica
Seita.3G393800 0.5kb downstream 0.5kb downstream 7303 true scaffold_3: 49510435-49517737 Setaria italica
Seita.3G393800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 49510435-49510934 Setaria italica
Seita.3G393800 1.0kb upstream 1.0kb upstream 7803 true scaffold_3: 49510935-49518737 Setaria italica
Seita.3G393800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 49517738-49518737 Setaria italica
Seita.3G393800 1.0kb downstream 1.0kb downstream 7803 true scaffold_3: 49509935-49517737 Setaria italica
Seita.3G393800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 49509935-49510934 Setaria italica
Seita.3G393800 2.0kb upstream 2.0kb upstream 8803 true scaffold_3: 49510935-49519737 Setaria italica
Seita.3G393800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 49517738-49519737 Setaria italica
Seita.3G393800 2.0kb downstream 2.0kb downstream 8803 true scaffold_3: 49508935-49517737 Setaria italica
Seita.3G393800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 49508935-49510934 Setaria italica
Seita.3G393800 5.0kb upstream 5.0kb upstream 11803 true scaffold_3: 49510935-49522737 Setaria italica
Seita.3G393800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 49517738-49522737 Setaria italica
Seita.3G393800 5.0kb downstream 5.0kb downstream 11803 true scaffold_3: 49505935-49517737 Setaria italica
Seita.3G393800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 49505935-49510934 Setaria italica
Seita.3G393800 10.0kb upstream 10.0kb upstream 16803 true scaffold_3: 49510935-49527737 Setaria italica
Seita.3G393800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 49517738-49527737 Setaria italica
Seita.3G393800 10.0kb downstream 10.0kb downstream 16803 true scaffold_3: 49500935-49517737 Setaria italica
Seita.3G393800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 49500935-49510934 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196240 5267 Panicoideae View MSA
124570039 5269 Grass View MSA
122041858 5273 Angiosperm View MSA
121345817 5274 Embryophyte View MSA
123425736 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.565        
cufflinks 3.888       High
cufflinks 2.508        
cufflinks 2.044        
cufflinks 1.727       Low
cufflinks 3.935       High
cufflinks 2.412        
cufflinks 3.19        
cufflinks 2.24        
cufflinks 1.351       Low
cufflinks 2.193        
cufflinks 2.862        
cufflinks 2.872        
cufflinks 2.182        
cufflinks 2.934        
cufflinks 2.988        
cufflinks 3.172        
cufflinks 2.482        
cufflinks 2.167        
cufflinks 2.882        

0 Strain