Gene : Seita.3G394000 S. italica v2.2
Defline:  (1 of 1) PTHR31384:SF3 - AUXIN RESPONSE FACTOR 6 Genomic Order:  3940
Name:  ? Seita.3G394000 Secondary Identifier:  ? PAC:32713192
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G394000 0.5kb upstream 0.5kb upstream 6854 true scaffold_3: 49527455-49534308 Setaria italica
Seita.3G394000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 49527455-49527954 Setaria italica
Seita.3G394000 0.5kb downstream 0.5kb downstream 6854 true scaffold_3: 49527955-49534808 Setaria italica
Seita.3G394000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 49534309-49534808 Setaria italica
Seita.3G394000 1.0kb upstream 1.0kb upstream 7354 true scaffold_3: 49526955-49534308 Setaria italica
Seita.3G394000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 49526955-49527954 Setaria italica
Seita.3G394000 1.0kb downstream 1.0kb downstream 7354 true scaffold_3: 49527955-49535308 Setaria italica
Seita.3G394000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 49534309-49535308 Setaria italica
Seita.3G394000 2.0kb upstream 2.0kb upstream 8354 true scaffold_3: 49525955-49534308 Setaria italica
Seita.3G394000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 49525955-49527954 Setaria italica
Seita.3G394000 2.0kb downstream 2.0kb downstream 8354 true scaffold_3: 49527955-49536308 Setaria italica
Seita.3G394000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 49534309-49536308 Setaria italica
Seita.3G394000 5.0kb upstream 5.0kb upstream 11354 true scaffold_3: 49522955-49534308 Setaria italica
Seita.3G394000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 49522955-49527954 Setaria italica
Seita.3G394000 5.0kb downstream 5.0kb downstream 11354 true scaffold_3: 49527955-49539308 Setaria italica
Seita.3G394000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 49534309-49539308 Setaria italica
Seita.3G394000 10.0kb upstream 10.0kb upstream 16354 true scaffold_3: 49517955-49534308 Setaria italica
Seita.3G394000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 49517955-49527954 Setaria italica
Seita.3G394000 10.0kb downstream 10.0kb downstream 16354 true scaffold_3: 49527955-49544308 Setaria italica
Seita.3G394000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 49534309-49544308 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176881 5267 Panicoideae View MSA
124573945 5269 Grass View MSA
122048595 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.709     High  
cufflinks 35.905     High High
cufflinks 1.239       Low
cufflinks 0.925       Low
cufflinks 2.126       Low
cufflinks 39.738     High High
cufflinks 18.312     High  
cufflinks 10.69        
cufflinks 12.163        
cufflinks 11.045        
cufflinks 21.398     High  
cufflinks 8.15        
cufflinks 10.651        
cufflinks 7.689        
cufflinks 15.537     High  
cufflinks 10.49        
cufflinks 10.142        
cufflinks 5.88        
cufflinks 0.454       Low
cufflinks 14.108        

0 Strain