Gene : Seita.3G395300 S. italica v2.2
Defline:  (1 of 2) 4.1.1.33 - Diphosphomevalonate decarboxylase / Mevalonate pyrophosphate decarboxylase Genomic Order:  3953
Name:  ? Seita.3G395300 Secondary Identifier:  ? PAC:32711467
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5910 Setaria italica pathologic  
Sitalica PWY-922 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G395300 0.5kb upstream 0.5kb upstream 4464 true scaffold_3: 49664075-49668538 Setaria italica
Seita.3G395300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 49664075-49664574 Setaria italica
Seita.3G395300 0.5kb downstream 0.5kb downstream 4464 true scaffold_3: 49664575-49669038 Setaria italica
Seita.3G395300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 49668539-49669038 Setaria italica
Seita.3G395300 1.0kb upstream 1.0kb upstream 4964 true scaffold_3: 49663575-49668538 Setaria italica
Seita.3G395300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 49663575-49664574 Setaria italica
Seita.3G395300 1.0kb downstream 1.0kb downstream 4964 true scaffold_3: 49664575-49669538 Setaria italica
Seita.3G395300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 49668539-49669538 Setaria italica
Seita.3G395300 2.0kb upstream 2.0kb upstream 5964 true scaffold_3: 49662575-49668538 Setaria italica
Seita.3G395300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 49662575-49664574 Setaria italica
Seita.3G395300 2.0kb downstream 2.0kb downstream 5964 true scaffold_3: 49664575-49670538 Setaria italica
Seita.3G395300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 49668539-49670538 Setaria italica
Seita.3G395300 5.0kb upstream 5.0kb upstream 8964 true scaffold_3: 49659575-49668538 Setaria italica
Seita.3G395300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 49659575-49664574 Setaria italica
Seita.3G395300 5.0kb downstream 5.0kb downstream 8964 true scaffold_3: 49664575-49673538 Setaria italica
Seita.3G395300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 49668539-49673538 Setaria italica
Seita.3G395300 10.0kb upstream 10.0kb upstream 13964 true scaffold_3: 49654575-49668538 Setaria italica
Seita.3G395300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 49654575-49664574 Setaria italica
Seita.3G395300 10.0kb downstream 10.0kb downstream 13964 true scaffold_3: 49664575-49678538 Setaria italica
Seita.3G395300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 49668539-49678538 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040965 5273 Angiosperm View MSA
122177408 5267 Panicoideae View MSA
124575988 5269 Grass View MSA
121347307 5274 Embryophyte View MSA
123380524 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.582        
cufflinks 1.411        
cufflinks 0.463       Low
cufflinks 0.7        
cufflinks 0.887        
cufflinks 0.961        
cufflinks 1.236        
cufflinks 1.351        
cufflinks 0.825        
cufflinks 1.637        
cufflinks 1.715        
cufflinks 1.882        
cufflinks 1.366        
cufflinks 0.449       Low
cufflinks 2.427       High
cufflinks 1.193        
cufflinks 2.416       High
cufflinks 0.527       Low
cufflinks 0.493       Low
cufflinks 2.663       High

0 Strain