Gene : Seita.3G396200 S. italica v2.2
Defline:  (1 of 6) PTHR11527//PTHR11527:SF151 - SMALL HEAT-SHOCK PROTEIN HSP20 FAMILY Genomic Order:  3962
Name:  ? Seita.3G396200 Secondary Identifier:  ? PAC:32711589
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G396200 0.5kb upstream 0.5kb upstream 2297 true scaffold_3: 49719719-49722015 Setaria italica
Seita.3G396200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 49721516-49722015 Setaria italica
Seita.3G396200 0.5kb downstream 0.5kb downstream 2297 true scaffold_3: 49719219-49721515 Setaria italica
Seita.3G396200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 49719219-49719718 Setaria italica
Seita.3G396200 1.0kb upstream 1.0kb upstream 2797 true scaffold_3: 49719719-49722515 Setaria italica
Seita.3G396200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 49721516-49722515 Setaria italica
Seita.3G396200 1.0kb downstream 1.0kb downstream 2797 true scaffold_3: 49718719-49721515 Setaria italica
Seita.3G396200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 49718719-49719718 Setaria italica
Seita.3G396200 2.0kb upstream 2.0kb upstream 3797 true scaffold_3: 49719719-49723515 Setaria italica
Seita.3G396200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 49721516-49723515 Setaria italica
Seita.3G396200 2.0kb downstream 2.0kb downstream 3797 true scaffold_3: 49717719-49721515 Setaria italica
Seita.3G396200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 49717719-49719718 Setaria italica
Seita.3G396200 5.0kb upstream 5.0kb upstream 6797 true scaffold_3: 49719719-49726515 Setaria italica
Seita.3G396200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 49721516-49726515 Setaria italica
Seita.3G396200 5.0kb downstream 5.0kb downstream 6797 true scaffold_3: 49714719-49721515 Setaria italica
Seita.3G396200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 49714719-49719718 Setaria italica
Seita.3G396200 10.0kb upstream 10.0kb upstream 11797 true scaffold_3: 49719719-49731515 Setaria italica
Seita.3G396200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 49721516-49731515 Setaria italica
Seita.3G396200 10.0kb downstream 10.0kb downstream 11797 true scaffold_3: 49709719-49721515 Setaria italica
Seita.3G396200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 49709719-49719718 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191341 5267 Panicoideae View MSA
124582666 5269 Grass View MSA
122051065 5273 Angiosperm View MSA
121312276 5274 Embryophyte View MSA
123428296 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.259        
cufflinks 0.834        
cufflinks 0.021     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.178        
cufflinks 1.094        
cufflinks 1.22        
cufflinks 2.147       High
cufflinks 1.032        
cufflinks 1.981       High
cufflinks 1.547        
cufflinks 0.434        
cufflinks 0.983        
cufflinks 0.013     Low Low
cufflinks 0.703        
cufflinks 0.44        
cufflinks 0.484        
cufflinks 0.152        
cufflinks 0.042     Low Low
cufflinks 0.693        

0 Strain