Gene : Seita.3G397800 S. italica v2.2
Defline:  (1 of 3) 2.5.1.32 - 15-cis-phytoene synthase / PSase Genomic Order:  3978
Name:  ? Seita.3G397800 Secondary Identifier:  ? PAC:32710181
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CAROTENOID-PWY Setaria italica pathologic  
Sitalica PWY-6475 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G397800 0.5kb upstream 0.5kb upstream 3558 true scaffold_3: 49831222-49834779 Setaria italica
Seita.3G397800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 49831222-49831721 Setaria italica
Seita.3G397800 0.5kb downstream 0.5kb downstream 3558 true scaffold_3: 49831722-49835279 Setaria italica
Seita.3G397800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 49834780-49835279 Setaria italica
Seita.3G397800 1.0kb upstream 1.0kb upstream 4058 true scaffold_3: 49830722-49834779 Setaria italica
Seita.3G397800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 49830722-49831721 Setaria italica
Seita.3G397800 1.0kb downstream 1.0kb downstream 4058 true scaffold_3: 49831722-49835779 Setaria italica
Seita.3G397800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 49834780-49835779 Setaria italica
Seita.3G397800 2.0kb upstream 2.0kb upstream 5058 true scaffold_3: 49829722-49834779 Setaria italica
Seita.3G397800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 49829722-49831721 Setaria italica
Seita.3G397800 2.0kb downstream 2.0kb downstream 5058 true scaffold_3: 49831722-49836779 Setaria italica
Seita.3G397800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 49834780-49836779 Setaria italica
Seita.3G397800 5.0kb upstream 5.0kb upstream 8058 true scaffold_3: 49826722-49834779 Setaria italica
Seita.3G397800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 49826722-49831721 Setaria italica
Seita.3G397800 5.0kb downstream 5.0kb downstream 8058 true scaffold_3: 49831722-49839779 Setaria italica
Seita.3G397800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 49834780-49839779 Setaria italica
Seita.3G397800 10.0kb upstream 10.0kb upstream 13058 true scaffold_3: 49821722-49834779 Setaria italica
Seita.3G397800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 49821722-49831721 Setaria italica
Seita.3G397800 10.0kb downstream 10.0kb downstream 13058 true scaffold_3: 49831722-49844779 Setaria italica
Seita.3G397800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 49834780-49844779 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
122177505 5267 Panicoideae View MSA
124573872 5269 Grass View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.698        
cufflinks 2.362       Low
cufflinks 11.872     High  
cufflinks 10.264        
cufflinks 19.966     High High
cufflinks 2.522        
cufflinks 14.166     High  
cufflinks 19.19     High High
cufflinks 19.631     High High
cufflinks 2.267       Low
cufflinks 4.299        
cufflinks 2.684        
cufflinks 1.74       Low
cufflinks 9.825        
cufflinks 2.666        
cufflinks 16.795     High  
cufflinks 3.91        
cufflinks 2.326       Low
cufflinks 48.619     High High
cufflinks 4.903        

0 Strain