Gene : Seita.3G401300 S. italica v2.2
Defline:  (1 of 1) PTHR10938//PTHR10938:SF2 - TRANSLATION INITIATION FACTOR IF-3 Genomic Order:  4013
Name:  ? Seita.3G401300 Secondary Identifier:  ? PAC:32714196
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G401300 0.5kb upstream 0.5kb upstream 5170 true scaffold_3: 50114678-50119847 Setaria italica
Seita.3G401300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 50114678-50115177 Setaria italica
Seita.3G401300 0.5kb downstream 0.5kb downstream 5170 true scaffold_3: 50115178-50120347 Setaria italica
Seita.3G401300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 50119848-50120347 Setaria italica
Seita.3G401300 1.0kb upstream 1.0kb upstream 5670 true scaffold_3: 50114178-50119847 Setaria italica
Seita.3G401300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 50114178-50115177 Setaria italica
Seita.3G401300 1.0kb downstream 1.0kb downstream 5670 true scaffold_3: 50115178-50120847 Setaria italica
Seita.3G401300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 50119848-50120847 Setaria italica
Seita.3G401300 2.0kb upstream 2.0kb upstream 6670 true scaffold_3: 50113178-50119847 Setaria italica
Seita.3G401300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 50113178-50115177 Setaria italica
Seita.3G401300 2.0kb downstream 2.0kb downstream 6670 true scaffold_3: 50115178-50121847 Setaria italica
Seita.3G401300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 50119848-50121847 Setaria italica
Seita.3G401300 5.0kb upstream 5.0kb upstream 9670 true scaffold_3: 50110178-50119847 Setaria italica
Seita.3G401300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 50110178-50115177 Setaria italica
Seita.3G401300 5.0kb downstream 5.0kb downstream 9670 true scaffold_3: 50115178-50124847 Setaria italica
Seita.3G401300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 50119848-50124847 Setaria italica
Seita.3G401300 10.0kb upstream 10.0kb upstream 14670 true scaffold_3: 50105178-50119847 Setaria italica
Seita.3G401300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 50105178-50115177 Setaria italica
Seita.3G401300 10.0kb downstream 10.0kb downstream 14670 true scaffold_3: 50115178-50129847 Setaria italica
Seita.3G401300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 50119848-50129847 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183245 5267 Panicoideae View MSA
124580738 5269 Grass View MSA
122049946 5273 Angiosperm View MSA
121349179 5274 Embryophyte View MSA
123425847 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.603        
cufflinks 4.609        
cufflinks 3.133       Low
cufflinks 3.054       Low
cufflinks 2.696       Low
cufflinks 4.11        
cufflinks 4.032        
cufflinks 4.363        
cufflinks 4.039        
cufflinks 3.229        
cufflinks 4.598        
cufflinks 6.955       High
cufflinks 3.92        
cufflinks 2.861       Low
cufflinks 4.603        
cufflinks 5.331        
cufflinks 6.057       High
cufflinks 6.944       High
cufflinks 2.912       Low
cufflinks 5.325        

0 Strain