Gene : Seita.3G401600 S. italica v2.2
Defline:  (1 of 2) KOG0073 - GTP-binding ADP-ribosylation factor-like protein ARL2 Genomic Order:  4016
Name:  ? Seita.3G401600 Secondary Identifier:  ? PAC:32713178
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G401600 0.5kb upstream 0.5kb upstream 4709 true scaffold_3: 50129252-50133960 Setaria italica
Seita.3G401600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 50133461-50133960 Setaria italica
Seita.3G401600 0.5kb downstream 0.5kb downstream 4709 true scaffold_3: 50128752-50133460 Setaria italica
Seita.3G401600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 50128752-50129251 Setaria italica
Seita.3G401600 1.0kb upstream 1.0kb upstream 5209 true scaffold_3: 50129252-50134460 Setaria italica
Seita.3G401600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 50133461-50134460 Setaria italica
Seita.3G401600 1.0kb downstream 1.0kb downstream 5209 true scaffold_3: 50128252-50133460 Setaria italica
Seita.3G401600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 50128252-50129251 Setaria italica
Seita.3G401600 2.0kb upstream 2.0kb upstream 6209 true scaffold_3: 50129252-50135460 Setaria italica
Seita.3G401600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 50133461-50135460 Setaria italica
Seita.3G401600 2.0kb downstream 2.0kb downstream 6209 true scaffold_3: 50127252-50133460 Setaria italica
Seita.3G401600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 50127252-50129251 Setaria italica
Seita.3G401600 5.0kb upstream 5.0kb upstream 9209 true scaffold_3: 50129252-50138460 Setaria italica
Seita.3G401600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 50133461-50138460 Setaria italica
Seita.3G401600 5.0kb downstream 5.0kb downstream 9209 true scaffold_3: 50124252-50133460 Setaria italica
Seita.3G401600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 50124252-50129251 Setaria italica
Seita.3G401600 10.0kb upstream 10.0kb upstream 14209 true scaffold_3: 50129252-50143460 Setaria italica
Seita.3G401600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 50133461-50143460 Setaria italica
Seita.3G401600 10.0kb downstream 10.0kb downstream 14209 true scaffold_3: 50119252-50133460 Setaria italica
Seita.3G401600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 50119252-50129251 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194315 5267 Panicoideae View MSA
124573225 5269 Grass View MSA
122046802 5273 Angiosperm View MSA
123429166 5275 Viridiplantae View MSA
121349073 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.593       High
cufflinks 0.881        
cufflinks 0.582        
cufflinks 0.622        
cufflinks 0.3       Low
cufflinks 0.81        
cufflinks 0.758        
cufflinks 0.472       Low
cufflinks 0.466       Low
cufflinks 3.006       High
cufflinks 1.147        
cufflinks 1.982       High
cufflinks 1.381        
cufflinks 0.712        
cufflinks 1.349        
cufflinks 1.655        
cufflinks 2.275       High
cufflinks 1.697        
cufflinks 0.45       Low
cufflinks 1.64        

0 Strain