Gene : Seita.3G405300 S. italica v2.2
Defline:  (1 of 4) PTHR22953//PTHR22953:SF29 - ACID PHOSPHATASE RELATED Genomic Order:  4053
Name:  ? Seita.3G405300 Secondary Identifier:  ? PAC:32713753
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5083 Setaria italica pathologic  
Sitalica PWY-6348 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G405300 0.5kb upstream 0.5kb upstream 3538 true scaffold_3: 50355519-50359056 Setaria italica
Seita.3G405300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 50358557-50359056 Setaria italica
Seita.3G405300 0.5kb downstream 0.5kb downstream 3538 true scaffold_3: 50355019-50358556 Setaria italica
Seita.3G405300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 50355019-50355518 Setaria italica
Seita.3G405300 1.0kb upstream 1.0kb upstream 4038 true scaffold_3: 50355519-50359556 Setaria italica
Seita.3G405300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 50358557-50359556 Setaria italica
Seita.3G405300 1.0kb downstream 1.0kb downstream 4038 true scaffold_3: 50354519-50358556 Setaria italica
Seita.3G405300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 50354519-50355518 Setaria italica
Seita.3G405300 2.0kb upstream 2.0kb upstream 5038 true scaffold_3: 50355519-50360556 Setaria italica
Seita.3G405300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 50358557-50360556 Setaria italica
Seita.3G405300 2.0kb downstream 2.0kb downstream 5038 true scaffold_3: 50353519-50358556 Setaria italica
Seita.3G405300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 50353519-50355518 Setaria italica
Seita.3G405300 5.0kb upstream 5.0kb upstream 8038 true scaffold_3: 50355519-50363556 Setaria italica
Seita.3G405300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 50358557-50363556 Setaria italica
Seita.3G405300 5.0kb downstream 5.0kb downstream 8038 true scaffold_3: 50350519-50358556 Setaria italica
Seita.3G405300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 50350519-50355518 Setaria italica
Seita.3G405300 10.0kb upstream 10.0kb upstream 13038 true scaffold_3: 50355519-50368556 Setaria italica
Seita.3G405300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 50358557-50368556 Setaria italica
Seita.3G405300 10.0kb downstream 10.0kb downstream 13038 true scaffold_3: 50345519-50358556 Setaria italica
Seita.3G405300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 50345519-50355518 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993093 5273 Angiosperm View MSA
122184581 5267 Panicoideae View MSA
124574871 5269 Grass View MSA
121351600 5274 Embryophyte View MSA
123426131 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.508        
cufflinks 2.415        
cufflinks 0.895        
cufflinks 0.727        
cufflinks 1.754        
cufflinks 2.753        
cufflinks 0.956        
cufflinks 3.703        
cufflinks 1.225        
cufflinks 3.349        
cufflinks 2.423        
cufflinks 9.42       High
cufflinks 1.231        
cufflinks 2.891        
cufflinks 2.646        
cufflinks 0.336       Low
cufflinks 8.447       High
cufflinks 0.099       Low
cufflinks 2.007        
cufflinks 18.055     High High

0 Strain