Gene : Seita.3G403200 S. italica v2.2
Genomic Order:  4032 Name:  ? Seita.3G403200
Secondary Identifier:  ? PAC:32712398
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G403200 0.5kb upstream 0.5kb upstream 1621 true scaffold_3: 50257002-50258622 Setaria italica
Seita.3G403200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 50257002-50257501 Setaria italica
Seita.3G403200 0.5kb downstream 0.5kb downstream 1621 true scaffold_3: 50257502-50259122 Setaria italica
Seita.3G403200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 50258623-50259122 Setaria italica
Seita.3G403200 1.0kb upstream 1.0kb upstream 2121 true scaffold_3: 50256502-50258622 Setaria italica
Seita.3G403200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 50256502-50257501 Setaria italica
Seita.3G403200 1.0kb downstream 1.0kb downstream 2121 true scaffold_3: 50257502-50259622 Setaria italica
Seita.3G403200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 50258623-50259622 Setaria italica
Seita.3G403200 2.0kb upstream 2.0kb upstream 3121 true scaffold_3: 50255502-50258622 Setaria italica
Seita.3G403200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 50255502-50257501 Setaria italica
Seita.3G403200 2.0kb downstream 2.0kb downstream 3121 true scaffold_3: 50257502-50260622 Setaria italica
Seita.3G403200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 50258623-50260622 Setaria italica
Seita.3G403200 5.0kb upstream 5.0kb upstream 6121 true scaffold_3: 50252502-50258622 Setaria italica
Seita.3G403200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 50252502-50257501 Setaria italica
Seita.3G403200 5.0kb downstream 5.0kb downstream 6121 true scaffold_3: 50257502-50263622 Setaria italica
Seita.3G403200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 50258623-50263622 Setaria italica
Seita.3G403200 10.0kb upstream 10.0kb upstream 11121 true scaffold_3: 50247502-50258622 Setaria italica
Seita.3G403200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 50247502-50257501 Setaria italica
Seita.3G403200 10.0kb downstream 10.0kb downstream 11121 true scaffold_3: 50257502-50268622 Setaria italica
Seita.3G403200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 50258623-50268622 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195759 5267 Panicoideae View MSA
124587243 5269 Grass View MSA
122049581 5273 Angiosperm View MSA
121311486 5274 Embryophyte View MSA
123348778 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.504        
cufflinks 3.51        
cufflinks 0.516       Low
cufflinks 0.71       Low
cufflinks 0.565       Low
cufflinks 3.779        
cufflinks 3.21        
cufflinks 1.731        
cufflinks 2.014        
cufflinks 8.135       High
cufflinks 3.759        
cufflinks 7.265       High
cufflinks 2.699        
cufflinks 4.166        
cufflinks 4.49        
cufflinks 1.332        
cufflinks 5.973       High
cufflinks 2.094        
cufflinks 1.107        
cufflinks 4.771        

0 Strain