Gene : Seita.3G404600 S. italica v2.2
Defline:  (1 of 1) PTHR12313//PTHR12313:SF11 - RNF5 Genomic Order:  4046
Name:  ? Seita.3G404600 Secondary Identifier:  ? PAC:32714473
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G404600 0.5kb upstream 0.5kb upstream 3188 true scaffold_3: 50318916-50322103 Setaria italica
Seita.3G404600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 50318916-50319415 Setaria italica
Seita.3G404600 0.5kb downstream 0.5kb downstream 3188 true scaffold_3: 50319416-50322603 Setaria italica
Seita.3G404600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 50322104-50322603 Setaria italica
Seita.3G404600 1.0kb upstream 1.0kb upstream 3688 true scaffold_3: 50318416-50322103 Setaria italica
Seita.3G404600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 50318416-50319415 Setaria italica
Seita.3G404600 1.0kb downstream 1.0kb downstream 3688 true scaffold_3: 50319416-50323103 Setaria italica
Seita.3G404600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 50322104-50323103 Setaria italica
Seita.3G404600 2.0kb upstream 2.0kb upstream 4688 true scaffold_3: 50317416-50322103 Setaria italica
Seita.3G404600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 50317416-50319415 Setaria italica
Seita.3G404600 2.0kb downstream 2.0kb downstream 4688 true scaffold_3: 50319416-50324103 Setaria italica
Seita.3G404600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 50322104-50324103 Setaria italica
Seita.3G404600 5.0kb upstream 5.0kb upstream 7688 true scaffold_3: 50314416-50322103 Setaria italica
Seita.3G404600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 50314416-50319415 Setaria italica
Seita.3G404600 5.0kb downstream 5.0kb downstream 7688 true scaffold_3: 50319416-50327103 Setaria italica
Seita.3G404600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 50322104-50327103 Setaria italica
Seita.3G404600 10.0kb upstream 10.0kb upstream 12688 true scaffold_3: 50309416-50322103 Setaria italica
Seita.3G404600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 50309416-50319415 Setaria italica
Seita.3G404600 10.0kb downstream 10.0kb downstream 12688 true scaffold_3: 50319416-50332103 Setaria italica
Seita.3G404600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 50322104-50332103 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185222 5267 Panicoideae View MSA
124569620 5269 Grass View MSA
122043579 5273 Angiosperm View MSA
121350090 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.187     High  
cufflinks 15.198     High  
cufflinks 12.97     High Low
cufflinks 17.021     High  
cufflinks 17.068     High  
cufflinks 12.416       Low
cufflinks 18.959     High  
cufflinks 13.263        
cufflinks 13.26     High  
cufflinks 23.61     High High
cufflinks 19.161     High  
cufflinks 12.018       Low
cufflinks 22.458     High High
cufflinks 12.41       Low
cufflinks 14.459     High  
cufflinks 19.836     High High
cufflinks 13.438        
cufflinks 16.331     High  
cufflinks 17.934     High  
cufflinks 18.135     High  

0 Strain