Gene : Seita.3G406900 S. italica v2.2
Defline:  (1 of 170) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  4069
Name:  ? Seita.3G406900 Secondary Identifier:  ? PAC:32713495
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G406900 0.5kb upstream 0.5kb upstream 6297 true scaffold_3: 50498768-50505064 Setaria italica
Seita.3G406900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 50504565-50505064 Setaria italica
Seita.3G406900 0.5kb downstream 0.5kb downstream 6297 true scaffold_3: 50498268-50504564 Setaria italica
Seita.3G406900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 50498268-50498767 Setaria italica
Seita.3G406900 1.0kb upstream 1.0kb upstream 6797 true scaffold_3: 50498768-50505564 Setaria italica
Seita.3G406900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 50504565-50505564 Setaria italica
Seita.3G406900 1.0kb downstream 1.0kb downstream 6797 true scaffold_3: 50497768-50504564 Setaria italica
Seita.3G406900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 50497768-50498767 Setaria italica
Seita.3G406900 2.0kb upstream 2.0kb upstream 7797 true scaffold_3: 50498768-50506564 Setaria italica
Seita.3G406900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 50504565-50506564 Setaria italica
Seita.3G406900 2.0kb downstream 2.0kb downstream 7797 true scaffold_3: 50496768-50504564 Setaria italica
Seita.3G406900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 50496768-50498767 Setaria italica
Seita.3G406900 5.0kb upstream 5.0kb upstream 10797 true scaffold_3: 50498768-50509564 Setaria italica
Seita.3G406900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 50504565-50509564 Setaria italica
Seita.3G406900 5.0kb downstream 5.0kb downstream 10797 true scaffold_3: 50493768-50504564 Setaria italica
Seita.3G406900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 50493768-50498767 Setaria italica
Seita.3G406900 10.0kb upstream 10.0kb upstream 15797 true scaffold_3: 50498768-50514564 Setaria italica
Seita.3G406900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 50504565-50514564 Setaria italica
Seita.3G406900 10.0kb downstream 10.0kb downstream 15797 true scaffold_3: 50488768-50504564 Setaria italica
Seita.3G406900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 50488768-50498767 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184777 5267 Panicoideae View MSA
124578300 5269 Grass View MSA
122042407 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121350963 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.789        
cufflinks 12.621        
cufflinks 6.321        
cufflinks 5.24       Low
cufflinks 5.289       Low
cufflinks 12.882        
cufflinks 6.843        
cufflinks 6.316        
cufflinks 4.91       Low
cufflinks 6.837        
cufflinks 10.483        
cufflinks 18.837     High High
cufflinks 12.202        
cufflinks 8.604        
cufflinks 18.707     High High
cufflinks 7.633        
cufflinks 15.399     High High
cufflinks 16.416     High High
cufflinks 6.572        
cufflinks 14.001        

0 Strain