Gene : Seita.3G409500 S. italica v2.2
Defline:  (1 of 2) PF14780 - Domain of unknown function (DUF4477) (DUF4477) Genomic Order:  4095
Name:  ? Seita.3G409500 Secondary Identifier:  ? PAC:32710666
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G409500 0.5kb upstream 0.5kb upstream 6854 true scaffold_3: 50638033-50644886 Setaria italica
Seita.3G409500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 50638033-50638532 Setaria italica
Seita.3G409500 0.5kb downstream 0.5kb downstream 6854 true scaffold_3: 50638533-50645386 Setaria italica
Seita.3G409500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 50644887-50645386 Setaria italica
Seita.3G409500 1.0kb upstream 1.0kb upstream 7354 true scaffold_3: 50637533-50644886 Setaria italica
Seita.3G409500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 50637533-50638532 Setaria italica
Seita.3G409500 1.0kb downstream 1.0kb downstream 7354 true scaffold_3: 50638533-50645886 Setaria italica
Seita.3G409500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 50644887-50645886 Setaria italica
Seita.3G409500 2.0kb upstream 2.0kb upstream 8354 true scaffold_3: 50636533-50644886 Setaria italica
Seita.3G409500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 50636533-50638532 Setaria italica
Seita.3G409500 2.0kb downstream 2.0kb downstream 8354 true scaffold_3: 50638533-50646886 Setaria italica
Seita.3G409500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 50644887-50646886 Setaria italica
Seita.3G409500 5.0kb upstream 5.0kb upstream 11354 true scaffold_3: 50633533-50644886 Setaria italica
Seita.3G409500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 50633533-50638532 Setaria italica
Seita.3G409500 5.0kb downstream 5.0kb downstream 11354 true scaffold_3: 50638533-50649886 Setaria italica
Seita.3G409500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 50644887-50649886 Setaria italica
Seita.3G409500 10.0kb upstream 10.0kb upstream 16354 true scaffold_3: 50628533-50644886 Setaria italica
Seita.3G409500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 50628533-50638532 Setaria italica
Seita.3G409500 10.0kb downstream 10.0kb downstream 14044 true scaffold_3: 50638533-50652576 Setaria italica
Seita.3G409500 10.0kb downstream 10.0kb downstream 7690 false scaffold_3: 50644887-50652576 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191178 5267 Panicoideae View MSA
124571603 5269 Grass View MSA
122045884 5273 Angiosperm View MSA
121347885 5274 Embryophyte View MSA
123380665 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.214       High
cufflinks 2.608        
cufflinks 2.545        
cufflinks 2.479        
cufflinks 1.702       Low
cufflinks 2.899        
cufflinks 2.123        
cufflinks 2.733        
cufflinks 1.402       Low
cufflinks 2.34        
cufflinks 2.441        
cufflinks 2.588        
cufflinks 2.099        
cufflinks 2.003        
cufflinks 2.156        
cufflinks 3.417       High
cufflinks 2.716        
cufflinks 3.181       High
cufflinks 1.765       Low
cufflinks 2.55        

0 Strain