Gene : Seita.J024600 S. italica v2.2
Genomic Order:  2 Name:  ? Seita.J024600
Secondary Identifier:  ? PAC:32701693
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J024600 0.5kb upstream 0.5kb upstream 3553 true scaffold_33: 17711-21263 Setaria italica
Seita.J024600 0.5kb upstream 0.5kb upstream 500 false scaffold_33: 17711-18210 Setaria italica
Seita.J024600 0.5kb downstream 0.5kb downstream 3553 true scaffold_33: 18211-21763 Setaria italica
Seita.J024600 0.5kb downstream 0.5kb downstream 500 false scaffold_33: 21264-21763 Setaria italica
Seita.J024600 1.0kb upstream 1.0kb upstream 4053 true scaffold_33: 17211-21263 Setaria italica
Seita.J024600 1.0kb upstream 1.0kb upstream 1000 false scaffold_33: 17211-18210 Setaria italica
Seita.J024600 1.0kb downstream 1.0kb downstream 4053 true scaffold_33: 18211-22263 Setaria italica
Seita.J024600 1.0kb downstream 1.0kb downstream 1000 false scaffold_33: 21264-22263 Setaria italica
Seita.J024600 2.0kb upstream 2.0kb upstream 5053 true scaffold_33: 16211-21263 Setaria italica
Seita.J024600 2.0kb upstream 2.0kb upstream 2000 false scaffold_33: 16211-18210 Setaria italica
Seita.J024600 2.0kb downstream 2.0kb downstream 5053 true scaffold_33: 18211-23263 Setaria italica
Seita.J024600 2.0kb downstream 2.0kb downstream 2000 false scaffold_33: 21264-23263 Setaria italica
Seita.J024600 5.0kb upstream 5.0kb upstream 8053 true scaffold_33: 13211-21263 Setaria italica
Seita.J024600 5.0kb upstream 5.0kb upstream 5000 false scaffold_33: 13211-18210 Setaria italica
Seita.J024600 5.0kb downstream 5.0kb downstream 8053 true scaffold_33: 18211-26263 Setaria italica
Seita.J024600 5.0kb downstream 5.0kb downstream 5000 false scaffold_33: 21264-26263 Setaria italica
Seita.J024600 10.0kb upstream 10.0kb upstream 13053 true scaffold_33: 8211-21263 Setaria italica
Seita.J024600 10.0kb upstream 10.0kb upstream 10000 false scaffold_33: 8211-18210 Setaria italica
Seita.J024600 10.0kb downstream 10.0kb downstream 8142 true scaffold_33: 18211-26352 Setaria italica
Seita.J024600 10.0kb downstream 10.0kb downstream 5089 false scaffold_33: 21264-26352 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184635 5267 Panicoideae View MSA
124569577 5269 Grass View MSA
122041581 5273 Angiosperm View MSA
121351725 5274 Embryophyte View MSA
123382293 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.97     High  
cufflinks 1.305       Low
cufflinks 9.341        
cufflinks 19.632     High  
cufflinks 37.341     High High
cufflinks 1.846       Low
cufflinks 32.977     High High
cufflinks 5.151        
cufflinks 24.403     High High
cufflinks 8.476        
cufflinks 5.203        
cufflinks 9.148        
cufflinks 6.378        
cufflinks 28.449     High High
cufflinks 5.491        
cufflinks 9.638        
cufflinks 3.443       Low
cufflinks 10.369        
cufflinks 20.514     High  
cufflinks 9.428        

0 Strain