Gene : Seita.4G001300 S. italica v2.2
Defline:  (1 of 1) PTHR23315:SF111 - U-BOX DOMAIN-CONTAINING PROTEIN 14 Genomic Order:  13
Name:  ? Seita.4G001300 Secondary Identifier:  ? PAC:32708470
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7511 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G001300 0.5kb upstream 0.5kb upstream 3223 true scaffold_4: 137432-140654 Setaria italica
Seita.4G001300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 137432-137931 Setaria italica
Seita.4G001300 0.5kb downstream 0.5kb downstream 3223 true scaffold_4: 137932-141154 Setaria italica
Seita.4G001300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 140655-141154 Setaria italica
Seita.4G001300 1.0kb upstream 1.0kb upstream 3723 true scaffold_4: 136932-140654 Setaria italica
Seita.4G001300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 136932-137931 Setaria italica
Seita.4G001300 1.0kb downstream 1.0kb downstream 3723 true scaffold_4: 137932-141654 Setaria italica
Seita.4G001300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 140655-141654 Setaria italica
Seita.4G001300 2.0kb upstream 2.0kb upstream 4723 true scaffold_4: 135932-140654 Setaria italica
Seita.4G001300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 135932-137931 Setaria italica
Seita.4G001300 2.0kb downstream 2.0kb downstream 4723 true scaffold_4: 137932-142654 Setaria italica
Seita.4G001300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 140655-142654 Setaria italica
Seita.4G001300 5.0kb upstream 5.0kb upstream 7723 true scaffold_4: 132932-140654 Setaria italica
Seita.4G001300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 132932-137931 Setaria italica
Seita.4G001300 5.0kb downstream 5.0kb downstream 7723 true scaffold_4: 137932-145654 Setaria italica
Seita.4G001300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 140655-145654 Setaria italica
Seita.4G001300 10.0kb upstream 10.0kb upstream 12723 true scaffold_4: 127932-140654 Setaria italica
Seita.4G001300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 127932-137931 Setaria italica
Seita.4G001300 10.0kb downstream 10.0kb downstream 12723 true scaffold_4: 137932-150654 Setaria italica
Seita.4G001300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 140655-150654 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196571 5267 Panicoideae View MSA
124574030 5269 Grass View MSA
122042286 5273 Angiosperm View MSA
121349135 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.293        
cufflinks 10.874        
cufflinks 12.155     High  
cufflinks 11.979     High  
cufflinks 9.307        
cufflinks 11.202        
cufflinks 9.482        
cufflinks 8.999        
cufflinks 5.903       Low
cufflinks 10.372        
cufflinks 13.604     High  
cufflinks 28.93     High High
cufflinks 16.985     High  
cufflinks 11.626        
cufflinks 20.994     High High
cufflinks 8.558       Low
cufflinks 20.012     High High
cufflinks 13.242     High  
cufflinks 10.666        
cufflinks 19.688     High High

0 Strain