Gene : Seita.4G002800 S. italica v2.2
Defline:  (1 of 4) PF12576 - Protein of unknown function (DUF3754) (DUF3754) Genomic Order:  28
Name:  ? Seita.4G002800 Secondary Identifier:  ? PAC:32708153
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G002800 0.5kb upstream 0.5kb upstream 6216 true scaffold_4: 229190-235405 Setaria italica
Seita.4G002800 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 234906-235405 Setaria italica
Seita.4G002800 0.5kb downstream 0.5kb downstream 6216 true scaffold_4: 228690-234905 Setaria italica
Seita.4G002800 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 228690-229189 Setaria italica
Seita.4G002800 1.0kb upstream 1.0kb upstream 6716 true scaffold_4: 229190-235905 Setaria italica
Seita.4G002800 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 234906-235905 Setaria italica
Seita.4G002800 1.0kb downstream 1.0kb downstream 6716 true scaffold_4: 228190-234905 Setaria italica
Seita.4G002800 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 228190-229189 Setaria italica
Seita.4G002800 2.0kb upstream 2.0kb upstream 7716 true scaffold_4: 229190-236905 Setaria italica
Seita.4G002800 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 234906-236905 Setaria italica
Seita.4G002800 2.0kb downstream 2.0kb downstream 7716 true scaffold_4: 227190-234905 Setaria italica
Seita.4G002800 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 227190-229189 Setaria italica
Seita.4G002800 5.0kb upstream 5.0kb upstream 10716 true scaffold_4: 229190-239905 Setaria italica
Seita.4G002800 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 234906-239905 Setaria italica
Seita.4G002800 5.0kb downstream 5.0kb downstream 10716 true scaffold_4: 224190-234905 Setaria italica
Seita.4G002800 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 224190-229189 Setaria italica
Seita.4G002800 10.0kb upstream 10.0kb upstream 15716 true scaffold_4: 229190-244905 Setaria italica
Seita.4G002800 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 234906-244905 Setaria italica
Seita.4G002800 10.0kb downstream 10.0kb downstream 15716 true scaffold_4: 219190-234905 Setaria italica
Seita.4G002800 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 219190-229189 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185225 5267 Panicoideae View MSA
124573623 5269 Grass View MSA
122042590 5273 Angiosperm View MSA
121345760 5274 Embryophyte View MSA
123428488 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.827        
cufflinks 7.756        
cufflinks 20.417     High  
cufflinks 19.009     High  
cufflinks 21.738     High  
cufflinks 8.396        
cufflinks 23.273     High High
cufflinks 17.215     High  
cufflinks 20.767     High  
cufflinks 3.361       Low
cufflinks 5.812        
cufflinks 3.118       Low
cufflinks 2.368       Low
cufflinks 13.801     High  
cufflinks 1.642       Low
cufflinks 33.775     High High
cufflinks 2.829       Low
cufflinks 20.175     High  
cufflinks 13.346     High  
cufflinks 2.582       Low

0 Strain