Gene : Seita.4G002900 S. italica v2.2
Defline:  (1 of 1) PTHR21181:SF13 - NADH DEHYDROGENASE (UBIQUINONE) COMPLEX I, ASSEMBLY FACTOR 6 Genomic Order:  29
Name:  ? Seita.4G002900 Secondary Identifier:  ? PAC:32709510
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G002900 0.5kb upstream 0.5kb upstream 2504 true scaffold_4: 234477-236980 Setaria italica
Seita.4G002900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 234477-234976 Setaria italica
Seita.4G002900 0.5kb downstream 0.5kb downstream 2504 true scaffold_4: 234977-237480 Setaria italica
Seita.4G002900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 236981-237480 Setaria italica
Seita.4G002900 1.0kb upstream 1.0kb upstream 3004 true scaffold_4: 233977-236980 Setaria italica
Seita.4G002900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 233977-234976 Setaria italica
Seita.4G002900 1.0kb downstream 1.0kb downstream 3004 true scaffold_4: 234977-237980 Setaria italica
Seita.4G002900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 236981-237980 Setaria italica
Seita.4G002900 2.0kb upstream 2.0kb upstream 4004 true scaffold_4: 232977-236980 Setaria italica
Seita.4G002900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 232977-234976 Setaria italica
Seita.4G002900 2.0kb downstream 2.0kb downstream 4004 true scaffold_4: 234977-238980 Setaria italica
Seita.4G002900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 236981-238980 Setaria italica
Seita.4G002900 5.0kb upstream 5.0kb upstream 7004 true scaffold_4: 229977-236980 Setaria italica
Seita.4G002900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 229977-234976 Setaria italica
Seita.4G002900 5.0kb downstream 5.0kb downstream 7004 true scaffold_4: 234977-241980 Setaria italica
Seita.4G002900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 236981-241980 Setaria italica
Seita.4G002900 10.0kb upstream 10.0kb upstream 12004 true scaffold_4: 224977-236980 Setaria italica
Seita.4G002900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 224977-234976 Setaria italica
Seita.4G002900 10.0kb downstream 10.0kb downstream 12004 true scaffold_4: 234977-246980 Setaria italica
Seita.4G002900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 236981-246980 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197217 5267 Panicoideae View MSA
124577338 5269 Grass View MSA
122043915 5273 Angiosperm View MSA
121344708 5274 Embryophyte View MSA
123424120 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.314        
cufflinks 6.715       High
cufflinks 3.096        
cufflinks 2.718       Low
cufflinks 2.328       Low
cufflinks 7.396       High
cufflinks 3.442        
cufflinks 3.692        
cufflinks 3.582        
cufflinks 6.067        
cufflinks 5.412        
cufflinks 4.652        
cufflinks 7.953       High
cufflinks 3.353        
cufflinks 6.358        
cufflinks 2.07       Low
cufflinks 6.094        
cufflinks 2.582       Low
cufflinks 2.844        
cufflinks 6.392       High

0 Strain