Gene : Seita.4G006800 S. italica v2.2
Defline:  (1 of 3) PTHR23077:SF55 - NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE Genomic Order:  68
Name:  ? Seita.4G006800 Secondary Identifier:  ? PAC:32708284
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G006800 0.5kb upstream 0.5kb upstream 5032 true scaffold_4: 437200-442231 Setaria italica
Seita.4G006800 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 437200-437699 Setaria italica
Seita.4G006800 0.5kb downstream 0.5kb downstream 5032 true scaffold_4: 437700-442731 Setaria italica
Seita.4G006800 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 442232-442731 Setaria italica
Seita.4G006800 1.0kb upstream 1.0kb upstream 5532 true scaffold_4: 436700-442231 Setaria italica
Seita.4G006800 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 436700-437699 Setaria italica
Seita.4G006800 1.0kb downstream 1.0kb downstream 5532 true scaffold_4: 437700-443231 Setaria italica
Seita.4G006800 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 442232-443231 Setaria italica
Seita.4G006800 2.0kb upstream 2.0kb upstream 6532 true scaffold_4: 435700-442231 Setaria italica
Seita.4G006800 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 435700-437699 Setaria italica
Seita.4G006800 2.0kb downstream 2.0kb downstream 6532 true scaffold_4: 437700-444231 Setaria italica
Seita.4G006800 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 442232-444231 Setaria italica
Seita.4G006800 5.0kb upstream 5.0kb upstream 9532 true scaffold_4: 432700-442231 Setaria italica
Seita.4G006800 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 432700-437699 Setaria italica
Seita.4G006800 5.0kb downstream 5.0kb downstream 9532 true scaffold_4: 437700-447231 Setaria italica
Seita.4G006800 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 442232-447231 Setaria italica
Seita.4G006800 10.0kb upstream 10.0kb upstream 14532 true scaffold_4: 427700-442231 Setaria italica
Seita.4G006800 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 427700-437699 Setaria italica
Seita.4G006800 10.0kb downstream 10.0kb downstream 14532 true scaffold_4: 437700-452231 Setaria italica
Seita.4G006800 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 442232-452231 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189661 5267 Panicoideae View MSA
124573967 5269 Grass View MSA
122045822 5273 Angiosperm View MSA
121351435 5274 Embryophyte View MSA
123426108 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.658     High High
cufflinks 20.745     High High
cufflinks 11.787     High Low
cufflinks 9.704       Low
cufflinks 12.283     High  
cufflinks 20.384     High High
cufflinks 14.638     High  
cufflinks 13.69     High  
cufflinks 15.982     High  
cufflinks 11.41       Low
cufflinks 19.882     High High
cufflinks 16.308     High  
cufflinks 12.535        
cufflinks 12.488        
cufflinks 18.485     High  
cufflinks 14.175     High  
cufflinks 19.523     High  
cufflinks 18.395     High  
cufflinks 10.558       Low
cufflinks 17.512     High  

0 Strain