Gene : Seita.4G004500 S. italica v2.2
Defline:  (1 of 2) PTHR13402 - RGPR-RELATED Genomic Order:  45
Name:  ? Seita.4G004500 Secondary Identifier:  ? PAC:32709111
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G004500 0.5kb upstream 0.5kb upstream 9077 true scaffold_4: 330302-339378 Setaria italica
Seita.4G004500 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 338879-339378 Setaria italica
Seita.4G004500 0.5kb downstream 0.5kb downstream 9077 true scaffold_4: 329802-338878 Setaria italica
Seita.4G004500 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 329802-330301 Setaria italica
Seita.4G004500 1.0kb upstream 1.0kb upstream 9577 true scaffold_4: 330302-339878 Setaria italica
Seita.4G004500 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 338879-339878 Setaria italica
Seita.4G004500 1.0kb downstream 1.0kb downstream 9577 true scaffold_4: 329302-338878 Setaria italica
Seita.4G004500 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 329302-330301 Setaria italica
Seita.4G004500 2.0kb upstream 2.0kb upstream 10577 true scaffold_4: 330302-340878 Setaria italica
Seita.4G004500 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 338879-340878 Setaria italica
Seita.4G004500 2.0kb downstream 2.0kb downstream 10577 true scaffold_4: 328302-338878 Setaria italica
Seita.4G004500 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 328302-330301 Setaria italica
Seita.4G004500 5.0kb upstream 5.0kb upstream 13577 true scaffold_4: 330302-343878 Setaria italica
Seita.4G004500 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 338879-343878 Setaria italica
Seita.4G004500 5.0kb downstream 5.0kb downstream 13577 true scaffold_4: 325302-338878 Setaria italica
Seita.4G004500 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 325302-330301 Setaria italica
Seita.4G004500 10.0kb upstream 10.0kb upstream 18577 true scaffold_4: 330302-348878 Setaria italica
Seita.4G004500 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 338879-348878 Setaria italica
Seita.4G004500 10.0kb downstream 10.0kb downstream 18577 true scaffold_4: 320302-338878 Setaria italica
Seita.4G004500 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 320302-330301 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193663 5267 Panicoideae View MSA
124581045 5269 Grass View MSA
122051498 5273 Angiosperm View MSA
121349781 5274 Embryophyte View MSA
123425826 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.574       High
cufflinks 9.881        
cufflinks 9.591        
cufflinks 7.657       Low
cufflinks 7.63       Low
cufflinks 10.222        
cufflinks 9.211        
cufflinks 7.101       Low
cufflinks 9.027        
cufflinks 7.856       Low
cufflinks 10.118        
cufflinks 10.296        
cufflinks 11.182        
cufflinks 12.875       High
cufflinks 10.21        
cufflinks 8.7        
cufflinks 9.751        
cufflinks 11.455     High  
cufflinks 10.829        
cufflinks 11.729       High

0 Strain