Gene : Seita.4G008900 S. italica v2.2
Defline:  (1 of 1) PTHR10705 - DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT DAD1 Genomic Order:  89
Name:  ? Seita.4G008900 Secondary Identifier:  ? PAC:32708485
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G008900 0.5kb upstream 0.5kb upstream 3237 true scaffold_4: 587964-591200 Setaria italica
Seita.4G008900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 587964-588463 Setaria italica
Seita.4G008900 0.5kb downstream 0.5kb downstream 3237 true scaffold_4: 588464-591700 Setaria italica
Seita.4G008900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 591201-591700 Setaria italica
Seita.4G008900 1.0kb upstream 1.0kb upstream 3737 true scaffold_4: 587464-591200 Setaria italica
Seita.4G008900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 587464-588463 Setaria italica
Seita.4G008900 1.0kb downstream 1.0kb downstream 3737 true scaffold_4: 588464-592200 Setaria italica
Seita.4G008900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 591201-592200 Setaria italica
Seita.4G008900 2.0kb upstream 2.0kb upstream 4737 true scaffold_4: 586464-591200 Setaria italica
Seita.4G008900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 586464-588463 Setaria italica
Seita.4G008900 2.0kb downstream 2.0kb downstream 4737 true scaffold_4: 588464-593200 Setaria italica
Seita.4G008900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 591201-593200 Setaria italica
Seita.4G008900 5.0kb upstream 5.0kb upstream 7737 true scaffold_4: 583464-591200 Setaria italica
Seita.4G008900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 583464-588463 Setaria italica
Seita.4G008900 5.0kb downstream 5.0kb downstream 7737 true scaffold_4: 588464-596200 Setaria italica
Seita.4G008900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 591201-596200 Setaria italica
Seita.4G008900 10.0kb upstream 10.0kb upstream 12737 true scaffold_4: 578464-591200 Setaria italica
Seita.4G008900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 578464-588463 Setaria italica
Seita.4G008900 10.0kb downstream 10.0kb downstream 12737 true scaffold_4: 588464-601200 Setaria italica
Seita.4G008900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 591201-601200 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185214 5267 Panicoideae View MSA
124579038 5269 Grass View MSA
122049085 5273 Angiosperm View MSA
121345892 5274 Embryophyte View MSA
123425631 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.735        
cufflinks 18.042     High  
cufflinks 6.158       Low
cufflinks 6.045       Low
cufflinks 6.022       Low
cufflinks 20.937     High  
cufflinks 9.954        
cufflinks 20.026     High  
cufflinks 12.594     High  
cufflinks 27.843     High High
cufflinks 12.388        
cufflinks 15.828     High  
cufflinks 16.3     High  
cufflinks 10.931        
cufflinks 19.488     High  
cufflinks 5.483       Low
cufflinks 23.803     High High
cufflinks 5.748       Low
cufflinks 8.217        
cufflinks 21.656     High High

0 Strain