Gene : Seita.4G009200 S. italica v2.2
Defline:  (1 of 1) 1.2.1.31 - L-aminoadipate-semialdehyde dehydrogenase / oxidoreductase Genomic Order:  92
Name:  ? Seita.4G009200 Secondary Identifier:  ? PAC:32708928
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica LYSINE-DEG1-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G009200 0.5kb upstream 0.5kb upstream 11195 true scaffold_4: 596060-607254 Setaria italica
Seita.4G009200 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 606755-607254 Setaria italica
Seita.4G009200 0.5kb downstream 0.5kb downstream 11195 true scaffold_4: 595560-606754 Setaria italica
Seita.4G009200 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 595560-596059 Setaria italica
Seita.4G009200 1.0kb upstream 1.0kb upstream 11695 true scaffold_4: 596060-607754 Setaria italica
Seita.4G009200 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 606755-607754 Setaria italica
Seita.4G009200 1.0kb downstream 1.0kb downstream 11695 true scaffold_4: 595060-606754 Setaria italica
Seita.4G009200 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 595060-596059 Setaria italica
Seita.4G009200 2.0kb upstream 2.0kb upstream 12695 true scaffold_4: 596060-608754 Setaria italica
Seita.4G009200 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 606755-608754 Setaria italica
Seita.4G009200 2.0kb downstream 2.0kb downstream 12695 true scaffold_4: 594060-606754 Setaria italica
Seita.4G009200 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 594060-596059 Setaria italica
Seita.4G009200 5.0kb upstream 5.0kb upstream 15695 true scaffold_4: 596060-611754 Setaria italica
Seita.4G009200 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 606755-611754 Setaria italica
Seita.4G009200 5.0kb downstream 5.0kb downstream 15695 true scaffold_4: 591060-606754 Setaria italica
Seita.4G009200 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 591060-596059 Setaria italica
Seita.4G009200 10.0kb upstream 10.0kb upstream 20695 true scaffold_4: 596060-616754 Setaria italica
Seita.4G009200 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 606755-616754 Setaria italica
Seita.4G009200 10.0kb downstream 10.0kb downstream 20695 true scaffold_4: 586060-606754 Setaria italica
Seita.4G009200 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 586060-596059 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187812 5267 Panicoideae View MSA
124568837 5269 Grass View MSA
122047218 5273 Angiosperm View MSA
121345046 5274 Embryophyte View MSA
123425856 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.74       High
cufflinks 2.004        
cufflinks 2.086        
cufflinks 2.088        
cufflinks 1.408        
cufflinks 1.633        
cufflinks 2.111        
cufflinks 1.121       Low
cufflinks 1.125       Low
cufflinks 1.28        
cufflinks 1.865        
cufflinks 1.234        
cufflinks 1.167       Low
cufflinks 1.882        
cufflinks 1.557        
cufflinks 3.353       High
cufflinks 1.235        
cufflinks 4.021       High
cufflinks 1.425        
cufflinks 1.322        

0 Strain