Gene : Seita.4G011900 S. italica v2.2
Defline:  (1 of 2) PTHR11404:SF8 - SUPEROXIDE DISMUTASE [FE] 1, CHLOROPLASTIC Genomic Order:  119
Name:  ? Seita.4G011900 Secondary Identifier:  ? PAC:32708156
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica DETOX1-PWY Setaria italica pathologic  
Sitalica DETOX1-PWY-1 Setaria italica pathologic  
Sitalica PWY-6854 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G011900 0.5kb upstream 0.5kb upstream 2547 true scaffold_4: 751406-753952 Setaria italica
Seita.4G011900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 753453-753952 Setaria italica
Seita.4G011900 0.5kb downstream 0.5kb downstream 2547 true scaffold_4: 750906-753452 Setaria italica
Seita.4G011900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 750906-751405 Setaria italica
Seita.4G011900 1.0kb upstream 1.0kb upstream 3047 true scaffold_4: 751406-754452 Setaria italica
Seita.4G011900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 753453-754452 Setaria italica
Seita.4G011900 1.0kb downstream 1.0kb downstream 3047 true scaffold_4: 750406-753452 Setaria italica
Seita.4G011900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 750406-751405 Setaria italica
Seita.4G011900 2.0kb upstream 2.0kb upstream 4047 true scaffold_4: 751406-755452 Setaria italica
Seita.4G011900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 753453-755452 Setaria italica
Seita.4G011900 2.0kb downstream 2.0kb downstream 4047 true scaffold_4: 749406-753452 Setaria italica
Seita.4G011900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 749406-751405 Setaria italica
Seita.4G011900 5.0kb upstream 5.0kb upstream 7047 true scaffold_4: 751406-758452 Setaria italica
Seita.4G011900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 753453-758452 Setaria italica
Seita.4G011900 5.0kb downstream 5.0kb downstream 7047 true scaffold_4: 746406-753452 Setaria italica
Seita.4G011900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 746406-751405 Setaria italica
Seita.4G011900 10.0kb upstream 10.0kb upstream 12047 true scaffold_4: 751406-763452 Setaria italica
Seita.4G011900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 753453-763452 Setaria italica
Seita.4G011900 10.0kb downstream 10.0kb downstream 12047 true scaffold_4: 741406-753452 Setaria italica
Seita.4G011900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 741406-751405 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122053716 5267 Panicoideae Singleton cluster - no MSA
124353575 5269 Grass Singleton cluster - no MSA
122047747 5273 Angiosperm View MSA
121351401 5274 Embryophyte View MSA
123425969 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.124        
cufflinks 0.604        
cufflinks 0.386        
cufflinks 0.107       Low
cufflinks 0.597        
cufflinks 0.651        
cufflinks 1.323        
cufflinks 1.591       High
cufflinks 2.41       High
cufflinks 0.818        
cufflinks 0.651        
cufflinks 0.016     Low Low
cufflinks 0.081     Low Low
cufflinks 0.868        
cufflinks 0.166        
cufflinks 1.015        
cufflinks 0.108     Low Low
cufflinks 0.681        
cufflinks 0.232        
cufflinks 0.142        

0 Strain