Gene : Seita.4G013000 S. italica v2.2
Defline:  (1 of 1) PTHR24078:SF283 - GAMETOPHYTIC FACTOR 2 Genomic Order:  130
Name:  ? Seita.4G013000 Secondary Identifier:  ? PAC:32707889
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G013000 0.5kb upstream 0.5kb upstream 5493 true scaffold_4: 804945-810437 Setaria italica
Seita.4G013000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 809938-810437 Setaria italica
Seita.4G013000 0.5kb downstream 0.5kb downstream 5493 true scaffold_4: 804445-809937 Setaria italica
Seita.4G013000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 804445-804944 Setaria italica
Seita.4G013000 1.0kb upstream 1.0kb upstream 5993 true scaffold_4: 804945-810937 Setaria italica
Seita.4G013000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 809938-810937 Setaria italica
Seita.4G013000 1.0kb downstream 1.0kb downstream 5993 true scaffold_4: 803945-809937 Setaria italica
Seita.4G013000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 803945-804944 Setaria italica
Seita.4G013000 2.0kb upstream 2.0kb upstream 6993 true scaffold_4: 804945-811937 Setaria italica
Seita.4G013000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 809938-811937 Setaria italica
Seita.4G013000 2.0kb downstream 2.0kb downstream 6993 true scaffold_4: 802945-809937 Setaria italica
Seita.4G013000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 802945-804944 Setaria italica
Seita.4G013000 5.0kb upstream 5.0kb upstream 9993 true scaffold_4: 804945-814937 Setaria italica
Seita.4G013000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 809938-814937 Setaria italica
Seita.4G013000 5.0kb downstream 5.0kb downstream 9993 true scaffold_4: 799945-809937 Setaria italica
Seita.4G013000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 799945-804944 Setaria italica
Seita.4G013000 10.0kb upstream 10.0kb upstream 14993 true scaffold_4: 804945-819937 Setaria italica
Seita.4G013000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 809938-819937 Setaria italica
Seita.4G013000 10.0kb downstream 10.0kb downstream 14993 true scaffold_4: 794945-809937 Setaria italica
Seita.4G013000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 794945-804944 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179738 5267 Panicoideae View MSA
124569666 5269 Grass View MSA
122041939 5273 Angiosperm View MSA
121345452 5274 Embryophyte View MSA
123380218 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.247       High
cufflinks 2.138        
cufflinks 0.557       Low
cufflinks 0.558       Low
cufflinks 0.89       Low
cufflinks 1.559        
cufflinks 2.499        
cufflinks 1.408        
cufflinks 1.232        
cufflinks 4.668       High
cufflinks 2.435        
cufflinks 2.7        
cufflinks 1.565        
cufflinks 1.426        
cufflinks 2.347        
cufflinks 4.645       High
cufflinks 1.833        
cufflinks 8.348       High
cufflinks 1.967        
cufflinks 1.867        

0 Strain