Gene : Seita.3G344900 S. italica v2.2
Defline:  (1 of 1) PTHR21311 - CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8 Genomic Order:  3449
Name:  ? Seita.3G344900 Secondary Identifier:  ? PAC:32713118
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G344900 0.5kb upstream 0.5kb upstream 5272 true scaffold_3: 44403562-44408833 Setaria italica
Seita.3G344900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 44408334-44408833 Setaria italica
Seita.3G344900 0.5kb downstream 0.5kb downstream 5272 true scaffold_3: 44403062-44408333 Setaria italica
Seita.3G344900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 44403062-44403561 Setaria italica
Seita.3G344900 1.0kb upstream 1.0kb upstream 5772 true scaffold_3: 44403562-44409333 Setaria italica
Seita.3G344900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 44408334-44409333 Setaria italica
Seita.3G344900 1.0kb downstream 1.0kb downstream 5772 true scaffold_3: 44402562-44408333 Setaria italica
Seita.3G344900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 44402562-44403561 Setaria italica
Seita.3G344900 2.0kb upstream 2.0kb upstream 6772 true scaffold_3: 44403562-44410333 Setaria italica
Seita.3G344900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 44408334-44410333 Setaria italica
Seita.3G344900 2.0kb downstream 2.0kb downstream 6772 true scaffold_3: 44401562-44408333 Setaria italica
Seita.3G344900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 44401562-44403561 Setaria italica
Seita.3G344900 5.0kb upstream 5.0kb upstream 9772 true scaffold_3: 44403562-44413333 Setaria italica
Seita.3G344900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 44408334-44413333 Setaria italica
Seita.3G344900 5.0kb downstream 5.0kb downstream 9772 true scaffold_3: 44398562-44408333 Setaria italica
Seita.3G344900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 44398562-44403561 Setaria italica
Seita.3G344900 10.0kb upstream 10.0kb upstream 14772 true scaffold_3: 44403562-44418333 Setaria italica
Seita.3G344900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 44408334-44418333 Setaria italica
Seita.3G344900 10.0kb downstream 10.0kb downstream 14772 true scaffold_3: 44393562-44408333 Setaria italica
Seita.3G344900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 44393562-44403561 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180830 5267 Panicoideae View MSA
124577455 5269 Grass View MSA
122042545 5273 Angiosperm View MSA
121347456 5274 Embryophyte View MSA
123426400 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.856        
cufflinks 18.179     High High
cufflinks 6.793       Low
cufflinks 6.07       Low
cufflinks 5.092       Low
cufflinks 16.123     High High
cufflinks 10.391        
cufflinks 10.762        
cufflinks 8.417        
cufflinks 10.29        
cufflinks 13.058        
cufflinks 12.321        
cufflinks 11.877        
cufflinks 8.658        
cufflinks 16.217     High High
cufflinks 7.393        
cufflinks 14.554     High  
cufflinks 5.681       Low
cufflinks 7.749        
cufflinks 17.12     High High

0 Strain