Gene : Seita.3G346000 S. italica v2.2
Defline:  (1 of 1) PTHR20863:SF29 - ACYL CARRIER PROTEIN 1, CHLOROPLASTIC-RELATED Genomic Order:  3460
Name:  ? Seita.3G346000 Secondary Identifier:  ? PAC:32710875
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G346000 0.5kb upstream 0.5kb upstream 3428 true scaffold_3: 44489133-44492560 Setaria italica
Seita.3G346000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 44489133-44489632 Setaria italica
Seita.3G346000 0.5kb downstream 0.5kb downstream 3428 true scaffold_3: 44489633-44493060 Setaria italica
Seita.3G346000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 44492561-44493060 Setaria italica
Seita.3G346000 1.0kb upstream 1.0kb upstream 3928 true scaffold_3: 44488633-44492560 Setaria italica
Seita.3G346000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 44488633-44489632 Setaria italica
Seita.3G346000 1.0kb downstream 1.0kb downstream 3928 true scaffold_3: 44489633-44493560 Setaria italica
Seita.3G346000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 44492561-44493560 Setaria italica
Seita.3G346000 2.0kb upstream 2.0kb upstream 4928 true scaffold_3: 44487633-44492560 Setaria italica
Seita.3G346000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 44487633-44489632 Setaria italica
Seita.3G346000 2.0kb downstream 2.0kb downstream 4928 true scaffold_3: 44489633-44494560 Setaria italica
Seita.3G346000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 44492561-44494560 Setaria italica
Seita.3G346000 5.0kb upstream 5.0kb upstream 7928 true scaffold_3: 44484633-44492560 Setaria italica
Seita.3G346000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 44484633-44489632 Setaria italica
Seita.3G346000 5.0kb downstream 5.0kb downstream 7928 true scaffold_3: 44489633-44497560 Setaria italica
Seita.3G346000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 44492561-44497560 Setaria italica
Seita.3G346000 10.0kb upstream 10.0kb upstream 12928 true scaffold_3: 44479633-44492560 Setaria italica
Seita.3G346000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 44479633-44489632 Setaria italica
Seita.3G346000 10.0kb downstream 10.0kb downstream 12928 true scaffold_3: 44489633-44502560 Setaria italica
Seita.3G346000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 44492561-44502560 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180055 5267 Panicoideae View MSA
124573366 5269 Grass View MSA
122049325 5273 Angiosperm View MSA
121348515 5274 Embryophyte View MSA
123428029 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.108        
cufflinks 6.959        
cufflinks 44.464     High High
cufflinks 53.946     High High
cufflinks 56.8     High High
cufflinks 8.321        
cufflinks 39.785     High  
cufflinks 65.379     High High
cufflinks 75.276     High High
cufflinks 8.074        
cufflinks 4.535       Low
cufflinks 3.055       Low
cufflinks 6.865        
cufflinks 16.444     High  
cufflinks 7.068        
cufflinks 23.82     High  
cufflinks 4.952       Low
cufflinks 8.606        
cufflinks 40.289     High  
cufflinks 6.618        

0 Strain