Gene : Seita.3G345800 S. italica v2.2
Defline:  (1 of 1) PTHR31209:SF0 - COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE Genomic Order:  3458
Name:  ? Seita.3G345800 Secondary Identifier:  ? PAC:32713525
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica GLUCONEO-PWY Setaria italica pathologic  
Sitalica PWY-1042 Setaria italica pathologic  
Sitalica PWY-5464 Setaria italica pathologic  
Sitalica PWY-5723 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G345800 0.5kb upstream 0.5kb upstream 3313 true scaffold_3: 44469913-44473225 Setaria italica
Seita.3G345800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 44469913-44470412 Setaria italica
Seita.3G345800 0.5kb downstream 0.5kb downstream 3313 true scaffold_3: 44470413-44473725 Setaria italica
Seita.3G345800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 44473226-44473725 Setaria italica
Seita.3G345800 1.0kb upstream 1.0kb upstream 3813 true scaffold_3: 44469413-44473225 Setaria italica
Seita.3G345800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 44469413-44470412 Setaria italica
Seita.3G345800 1.0kb downstream 1.0kb downstream 3813 true scaffold_3: 44470413-44474225 Setaria italica
Seita.3G345800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 44473226-44474225 Setaria italica
Seita.3G345800 2.0kb upstream 2.0kb upstream 4813 true scaffold_3: 44468413-44473225 Setaria italica
Seita.3G345800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 44468413-44470412 Setaria italica
Seita.3G345800 2.0kb downstream 2.0kb downstream 4813 true scaffold_3: 44470413-44475225 Setaria italica
Seita.3G345800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 44473226-44475225 Setaria italica
Seita.3G345800 5.0kb upstream 5.0kb upstream 7813 true scaffold_3: 44465413-44473225 Setaria italica
Seita.3G345800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 44465413-44470412 Setaria italica
Seita.3G345800 5.0kb downstream 5.0kb downstream 7813 true scaffold_3: 44470413-44478225 Setaria italica
Seita.3G345800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 44473226-44478225 Setaria italica
Seita.3G345800 10.0kb upstream 10.0kb upstream 12813 true scaffold_3: 44460413-44473225 Setaria italica
Seita.3G345800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 44460413-44470412 Setaria italica
Seita.3G345800 10.0kb downstream 10.0kb downstream 12813 true scaffold_3: 44470413-44483225 Setaria italica
Seita.3G345800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 44473226-44483225 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175652 5267 Panicoideae View MSA
124574027 5269 Grass View MSA
122046055 5273 Angiosperm View MSA
121343817 5274 Embryophyte View MSA
123428865 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.22     High High
cufflinks 17.334     High  
cufflinks 13.936     High  
cufflinks 14.115     High  
cufflinks 12.821     High Low
cufflinks 16.559     High  
cufflinks 11.275       Low
cufflinks 16.815     High  
cufflinks 12.324       Low
cufflinks 24.028     High High
cufflinks 20.522     High  
cufflinks 26.623     High High
cufflinks 21.987     High  
cufflinks 16.558     High  
cufflinks 21.088     High  
cufflinks 11.248       Low
cufflinks 28.76     High High
cufflinks 14.832     High  
cufflinks 14.452     High  
cufflinks 24.846     High High

0 Strain