Gene : Seita.3G350600 S. italica v2.2
Defline:  (1 of 3) KOG1595 - CCCH-type Zn-finger protein Genomic Order:  3506
Name:  ? Seita.3G350600 Secondary Identifier:  ? PAC:32713783
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G350600 0.5kb upstream 0.5kb upstream 3717 true scaffold_3: 45012548-45016264 Setaria italica
Seita.3G350600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 45015765-45016264 Setaria italica
Seita.3G350600 0.5kb downstream 0.5kb downstream 3717 true scaffold_3: 45012048-45015764 Setaria italica
Seita.3G350600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 45012048-45012547 Setaria italica
Seita.3G350600 1.0kb upstream 1.0kb upstream 4217 true scaffold_3: 45012548-45016764 Setaria italica
Seita.3G350600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 45015765-45016764 Setaria italica
Seita.3G350600 1.0kb downstream 1.0kb downstream 4217 true scaffold_3: 45011548-45015764 Setaria italica
Seita.3G350600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 45011548-45012547 Setaria italica
Seita.3G350600 2.0kb upstream 2.0kb upstream 5217 true scaffold_3: 45012548-45017764 Setaria italica
Seita.3G350600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 45015765-45017764 Setaria italica
Seita.3G350600 2.0kb downstream 2.0kb downstream 5217 true scaffold_3: 45010548-45015764 Setaria italica
Seita.3G350600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 45010548-45012547 Setaria italica
Seita.3G350600 5.0kb upstream 5.0kb upstream 8217 true scaffold_3: 45012548-45020764 Setaria italica
Seita.3G350600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 45015765-45020764 Setaria italica
Seita.3G350600 5.0kb downstream 5.0kb downstream 8217 true scaffold_3: 45007548-45015764 Setaria italica
Seita.3G350600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 45007548-45012547 Setaria italica
Seita.3G350600 10.0kb upstream 10.0kb upstream 13217 true scaffold_3: 45012548-45025764 Setaria italica
Seita.3G350600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 45015765-45025764 Setaria italica
Seita.3G350600 10.0kb downstream 10.0kb downstream 13217 true scaffold_3: 45002548-45015764 Setaria italica
Seita.3G350600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 45002548-45012547 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027558 5273 Angiosperm View MSA
122185654 5267 Panicoideae View MSA
124570393 5269 Grass View MSA
123429052 5275 Viridiplantae View MSA
121351105 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.268        
cufflinks 2.793        
cufflinks 0.111       Low
cufflinks 0.08     Low Low
cufflinks 0.109       Low
cufflinks 2.8        
cufflinks 1.02        
cufflinks 0.424        
cufflinks 0.283        
cufflinks 3.803       High
cufflinks 2.249        
cufflinks 1.01        
cufflinks 1.533        
cufflinks 0.233       Low
cufflinks 2.329        
cufflinks 1.139        
cufflinks 1.951        
cufflinks 1.419        
cufflinks 0.262        
cufflinks 1.791        

0 Strain