Gene : Seita.3G348600 S. italica v2.2
Defline:  (1 of 2) PTHR37236:SF1 - AUXIN-BINDING PROTEIN 1 Genomic Order:  3486
Name:  ? Seita.3G348600 Secondary Identifier:  ? PAC:32712093
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G348600 0.5kb upstream 0.5kb upstream 3998 true scaffold_3: 44725584-44729581 Setaria italica
Seita.3G348600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 44729082-44729581 Setaria italica
Seita.3G348600 0.5kb downstream 0.5kb downstream 3998 true scaffold_3: 44725084-44729081 Setaria italica
Seita.3G348600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 44725084-44725583 Setaria italica
Seita.3G348600 1.0kb upstream 1.0kb upstream 4498 true scaffold_3: 44725584-44730081 Setaria italica
Seita.3G348600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 44729082-44730081 Setaria italica
Seita.3G348600 1.0kb downstream 1.0kb downstream 4498 true scaffold_3: 44724584-44729081 Setaria italica
Seita.3G348600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 44724584-44725583 Setaria italica
Seita.3G348600 2.0kb upstream 2.0kb upstream 5498 true scaffold_3: 44725584-44731081 Setaria italica
Seita.3G348600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 44729082-44731081 Setaria italica
Seita.3G348600 2.0kb downstream 2.0kb downstream 5498 true scaffold_3: 44723584-44729081 Setaria italica
Seita.3G348600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 44723584-44725583 Setaria italica
Seita.3G348600 5.0kb upstream 5.0kb upstream 8498 true scaffold_3: 44725584-44734081 Setaria italica
Seita.3G348600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 44729082-44734081 Setaria italica
Seita.3G348600 5.0kb downstream 5.0kb downstream 8498 true scaffold_3: 44720584-44729081 Setaria italica
Seita.3G348600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 44720584-44725583 Setaria italica
Seita.3G348600 10.0kb upstream 10.0kb upstream 13498 true scaffold_3: 44725584-44739081 Setaria italica
Seita.3G348600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 44729082-44739081 Setaria italica
Seita.3G348600 10.0kb downstream 10.0kb downstream 13498 true scaffold_3: 44715584-44729081 Setaria italica
Seita.3G348600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 44715584-44725583 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184375 5267 Panicoideae View MSA
124586469 5269 Grass View MSA
122049427 5273 Angiosperm View MSA
121346924 5274 Embryophyte View MSA
123426893 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.551        
cufflinks 1.558        
cufflinks 0.317       Low
cufflinks 0.343       Low
cufflinks 0.414       Low
cufflinks 1.238        
cufflinks 0.581        
cufflinks 0.723        
cufflinks 0.421       Low
cufflinks 4.259       High
cufflinks 1.039        
cufflinks 0.788        
cufflinks 0.938        
cufflinks 0.727        
cufflinks 1.135        
cufflinks 1.103        
cufflinks 0.836        
cufflinks 1.738       High
cufflinks 1.171        
cufflinks 0.726        

0 Strain