Gene : Seita.3G348700 S. italica v2.2
Defline:  (1 of 2) PTHR37236:SF1 - AUXIN-BINDING PROTEIN 1 Genomic Order:  3487
Name:  ? Seita.3G348700 Secondary Identifier:  ? PAC:32714353
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G348700 0.5kb upstream 0.5kb upstream 2638 true scaffold_3: 44729525-44732162 Setaria italica
Seita.3G348700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 44731663-44732162 Setaria italica
Seita.3G348700 0.5kb downstream 0.5kb downstream 2638 true scaffold_3: 44729025-44731662 Setaria italica
Seita.3G348700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 44729025-44729524 Setaria italica
Seita.3G348700 1.0kb upstream 1.0kb upstream 3138 true scaffold_3: 44729525-44732662 Setaria italica
Seita.3G348700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 44731663-44732662 Setaria italica
Seita.3G348700 1.0kb downstream 1.0kb downstream 3138 true scaffold_3: 44728525-44731662 Setaria italica
Seita.3G348700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 44728525-44729524 Setaria italica
Seita.3G348700 2.0kb upstream 2.0kb upstream 4138 true scaffold_3: 44729525-44733662 Setaria italica
Seita.3G348700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 44731663-44733662 Setaria italica
Seita.3G348700 2.0kb downstream 2.0kb downstream 4138 true scaffold_3: 44727525-44731662 Setaria italica
Seita.3G348700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 44727525-44729524 Setaria italica
Seita.3G348700 5.0kb upstream 5.0kb upstream 7138 true scaffold_3: 44729525-44736662 Setaria italica
Seita.3G348700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 44731663-44736662 Setaria italica
Seita.3G348700 5.0kb downstream 5.0kb downstream 7138 true scaffold_3: 44724525-44731662 Setaria italica
Seita.3G348700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 44724525-44729524 Setaria italica
Seita.3G348700 10.0kb upstream 10.0kb upstream 12138 true scaffold_3: 44729525-44741662 Setaria italica
Seita.3G348700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 44731663-44741662 Setaria italica
Seita.3G348700 10.0kb downstream 10.0kb downstream 12138 true scaffold_3: 44719525-44731662 Setaria italica
Seita.3G348700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 44719525-44729524 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122117363 5267 Panicoideae View MSA
124411522 5269 Grass View MSA
122049427 5273 Angiosperm View MSA
121346924 5274 Embryophyte View MSA
123426893 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.331        
cufflinks 0.861        
cufflinks 0.853        
cufflinks 0.855        
cufflinks 1.622        
cufflinks 0.922        
cufflinks 2.094        
cufflinks 3.156       High
cufflinks 3.524       High
cufflinks 1.136        
cufflinks 0.939        
cufflinks 0.139       Low
cufflinks 0.188       Low
cufflinks 1.494        
cufflinks 0.271       Low
cufflinks 2.796       High
cufflinks 0.257       Low
cufflinks 0.546        
cufflinks 1.477        
cufflinks 0.326       Low

0 Strain