Gene : Seita.3G351500 S. italica v2.2
Defline:  (1 of 4) PTHR11528:SF41 - HEAT SHOCK PROTEIN 89.1 Genomic Order:  3515
Name:  ? Seita.3G351500 Secondary Identifier:  ? PAC:32712290
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G351500 0.5kb upstream 0.5kb upstream 7538 true scaffold_3: 45081252-45088789 Setaria italica
Seita.3G351500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 45081252-45081751 Setaria italica
Seita.3G351500 0.5kb downstream 0.5kb downstream 7538 true scaffold_3: 45081752-45089289 Setaria italica
Seita.3G351500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 45088790-45089289 Setaria italica
Seita.3G351500 1.0kb upstream 1.0kb upstream 8038 true scaffold_3: 45080752-45088789 Setaria italica
Seita.3G351500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 45080752-45081751 Setaria italica
Seita.3G351500 1.0kb downstream 1.0kb downstream 8038 true scaffold_3: 45081752-45089789 Setaria italica
Seita.3G351500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 45088790-45089789 Setaria italica
Seita.3G351500 2.0kb upstream 2.0kb upstream 9038 true scaffold_3: 45079752-45088789 Setaria italica
Seita.3G351500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 45079752-45081751 Setaria italica
Seita.3G351500 2.0kb downstream 2.0kb downstream 9038 true scaffold_3: 45081752-45090789 Setaria italica
Seita.3G351500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 45088790-45090789 Setaria italica
Seita.3G351500 5.0kb upstream 5.0kb upstream 12038 true scaffold_3: 45076752-45088789 Setaria italica
Seita.3G351500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 45076752-45081751 Setaria italica
Seita.3G351500 5.0kb downstream 5.0kb downstream 12038 true scaffold_3: 45081752-45093789 Setaria italica
Seita.3G351500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 45088790-45093789 Setaria italica
Seita.3G351500 10.0kb upstream 10.0kb upstream 17038 true scaffold_3: 45071752-45088789 Setaria italica
Seita.3G351500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 45071752-45081751 Setaria italica
Seita.3G351500 10.0kb downstream 10.0kb downstream 17038 true scaffold_3: 45081752-45098789 Setaria italica
Seita.3G351500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 45088790-45098789 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177454 5267 Panicoideae View MSA
124574402 5269 Grass View MSA
122044795 5273 Angiosperm View MSA
121310342 5274 Embryophyte View MSA
123428204 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.11       High
cufflinks 10.417        
cufflinks 2.352       Low
cufflinks 0.88       Low
cufflinks 1.852       Low
cufflinks 8.686        
cufflinks 6.669        
cufflinks 5.434        
cufflinks 4.827        
cufflinks 7.49        
cufflinks 7.434        
cufflinks 7.641        
cufflinks 5.244        
cufflinks 4.693        
cufflinks 11.189        
cufflinks 8.459        
cufflinks 7.542        
cufflinks 10.552        
cufflinks 1.993       Low
cufflinks 9.435        

0 Strain