Gene : Seita.3G351400 S. italica v2.2
Defline:  (1 of 9) PF00536 - SAM domain (Sterile alpha motif) (SAM_1) Genomic Order:  3514
Name:  ? Seita.3G351400 Secondary Identifier:  ? PAC:32712671
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G351400 0.5kb upstream 0.5kb upstream 4398 true scaffold_3: 45075179-45079576 Setaria italica
Seita.3G351400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 45075179-45075678 Setaria italica
Seita.3G351400 0.5kb downstream 0.5kb downstream 4398 true scaffold_3: 45075679-45080076 Setaria italica
Seita.3G351400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 45079577-45080076 Setaria italica
Seita.3G351400 1.0kb upstream 1.0kb upstream 4898 true scaffold_3: 45074679-45079576 Setaria italica
Seita.3G351400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 45074679-45075678 Setaria italica
Seita.3G351400 1.0kb downstream 1.0kb downstream 4898 true scaffold_3: 45075679-45080576 Setaria italica
Seita.3G351400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 45079577-45080576 Setaria italica
Seita.3G351400 2.0kb upstream 2.0kb upstream 5898 true scaffold_3: 45073679-45079576 Setaria italica
Seita.3G351400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 45073679-45075678 Setaria italica
Seita.3G351400 2.0kb downstream 2.0kb downstream 5898 true scaffold_3: 45075679-45081576 Setaria italica
Seita.3G351400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 45079577-45081576 Setaria italica
Seita.3G351400 5.0kb upstream 5.0kb upstream 8898 true scaffold_3: 45070679-45079576 Setaria italica
Seita.3G351400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 45070679-45075678 Setaria italica
Seita.3G351400 5.0kb downstream 5.0kb downstream 8898 true scaffold_3: 45075679-45084576 Setaria italica
Seita.3G351400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 45079577-45084576 Setaria italica
Seita.3G351400 10.0kb upstream 10.0kb upstream 13898 true scaffold_3: 45065679-45079576 Setaria italica
Seita.3G351400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 45065679-45075678 Setaria italica
Seita.3G351400 10.0kb downstream 10.0kb downstream 13898 true scaffold_3: 45075679-45089576 Setaria italica
Seita.3G351400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 45079577-45089576 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183997 5267 Panicoideae View MSA
124587072 5269 Grass View MSA
122050384 5273 Angiosperm View MSA
121345034 5274 Embryophyte View MSA
123380141 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.998     High High
cufflinks 13.403     High  
cufflinks 4.854       Low
cufflinks 6.157       Low
cufflinks 5.007       Low
cufflinks 12.403        
cufflinks 8.999        
cufflinks 7.06        
cufflinks 5.133       Low
cufflinks 15.793     High High
cufflinks 9.723        
cufflinks 9.416        
cufflinks 12.005        
cufflinks 6.711        
cufflinks 9.932        
cufflinks 11.002        
cufflinks 12.629        
cufflinks 12.77     High  
cufflinks 7.47        
cufflinks 11.736        

0 Strain